[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Pyrobaculum aerophilum str. IM2 (paer1)
Gene : AAL63955.1
DDBJ      :             conserved protein (toprim domain)
Swiss-Prot:Y2112_PYRAE  RecName: Full=UPF0095 protein PAE2112;

Homologs  Archaea  68/68 : Bacteria  0/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.136.1
:408 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   175->262 2au3A PDBj 4e-04 33.3 %
:RPS:PDB   164->329 1ddeA PDBj 6e-16 18.4 %
:RPS:PDB   313->363 2bv3A PDBj 7e-04 17.6 %
:RPS:SCOP  170->266 2fcjA1  c.136.1.1 * 4e-11 20.6 %
:HMM:SCOP  168->277 2fcjA1 c.136.1.1 * 1.2e-09 29.6 %
:HMM:PFM   173->238 PF01751 * Toprim 1.8e-06 28.8 66/96  
:BLT:SWISS 1->408 Y2112_PYRAE 0.0 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAL63955.1 GT:GENE AAL63955.1 GT:PRODUCT conserved protein (toprim domain) GT:DATABASE GIB00076CH01 GT:ORG paer1 GB:ACCESSION GIB00076CH01 GB:LOCATION complement(1243025..1244251) GB:FROM 1243025 GB:TO 1244251 GB:DIRECTION - GB:PRODUCT conserved protein (toprim domain) GB:NOTE DNA metabolism; DNA replication, recombination, and repair GB:PROTEIN_ID AAL63955.1 GB:DB_XREF GI:18160614 LENGTH 408 SQ:AASEQ MGALTIVAKYMIVAQIEVNGSVDKSDIIGALFSQTEGLLGKDMDLRELQMMGRIGRIEVDIFEKNGKTKAKIHIPSNLDRYETALVAALIESIERVGPYPAAVKVVEIRDLREEKRKKIIEKAKELVKLIEEEILPDTKEIIEKLKEDVAKAEIIEYGPERLPAGPDVDKSDSIIIVEGRADVVNLVKHGYRNVIALEGISRGVPQTIIELSKKKNVTVFIDGDKGGELVLRELLKVAHVDYIARAPPGKEVEQLTAKEIAKALRNKITLEEWLAQQKAAGEKAETPQQPPPQQPVPQQEVREEAQKPAFPFDITKKIDEMLGTLEAEIYDENWTLVKRLPVRELPDFLTTSGDSIYAIILDGITTQRIVDLAAKKGVKIIVTARTGPLTKVPENMQILTFDQLKKVE GT:EXON 1|1-408:0| SW:ID Y2112_PYRAE SW:DE RecName: Full=UPF0095 protein PAE2112; SW:GN OrderedLocusNames=PAE2112; SW:KW Complete proteome. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->408|Y2112_PYRAE|0.0|100.0|408/408| SEG 107->135|eirdlreekrkkiiekakelvklieeeil| SEG 287->299|pqqpppqqpvpqq| BL:PDB:NREP 1 BL:PDB:REP 175->262|2au3A|4e-04|33.3|87/403| RP:PDB:NREP 2 RP:PDB:REP 164->329|1ddeA|6e-16|18.4|163/310| RP:PDB:REP 313->363|2bv3A|7e-04|17.6|51/632| HM:PFM:NREP 1 HM:PFM:REP 173->238|PF01751|1.8e-06|28.8|66/96|Toprim| RP:SCP:NREP 1 RP:SCP:REP 170->266|2fcjA1|4e-11|20.6|97/114|c.136.1.1| HM:SCP:REP 168->277|2fcjA1|1.2e-09|29.6|108/0|c.136.1.1|1/1|Toprim domain| OP:NHOMO 69 OP:NHOMOORG 68 OP:PATTERN 11111111111111111111111111111111111111111111111111111111111111111111 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 226 STR:RPRED 55.4 SQ:SECSTR #######################################################################################################################################cccccEEEccccTTccGGGcEET##HHHHHHHccccccEEEEccHHHHHHHHHTTcccEEEcccccccccHHHHHHHHHHccEEEEEEcHHHHHHHGGGccTTcEEEEEEEEETccHHHHHHHHHHHHHHTcEEHHHHHHHHHGGGccTTcHHHHHHHHHHHHHHHTTccccHHHHHHHHHHHHHHHTcccGGGTTcTEEEEEEEEGGGcTTHHHTTTccEEEEEEEE############################################# DISOP:02AL 1-2, 279-302| PSIPRED cccHHHHHEEEEEEEEEEEEEEEccccEEEEEccccccccccccHHHHHHcccEEEEEEEEEEcccEEEEEEEEccccHHHHHHHHHHHHHHHHHcccccEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEcHHHHHHHHHccccEEEEEccccccccHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHcEEEEcccccEEHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHccccEEEEEEEccEEEcccEEEEEcHHHHHccc //