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Pyrobaculum aerophilum str. IM2 (paer1)
Gene : AAL64260.1
DDBJ      :             ribose ABC transporter, ATP-binding protein, putative
Swiss-Prot:             

Homologs  Archaea  20/68 : Bacteria  123/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
c.37.1
:365 amino acids
:PSIPRED
:BLT:PDB   10->172 1mv5D PDBj 1e-09 31.5 %
:BLT:PDB   217->350 2it1B PDBj 1e-10 38.8 %
:RPS:PDB   13->210 2dwoA PDBj 1e-16 11.3 %
:RPS:PDB   222->362 1bifA PDBj 6e-17 12.1 %
:RPS:SCOP  1->172 1sgwA  c.37.1.12 * 3e-16 13.9 %
:RPS:SCOP  220->356 1sgwA  c.37.1.12 * 5e-17 16.1 %
:HMM:SCOP  5->172 1ii8.1 c.37.1.12 * 5.8e-34 33.9 %
:HMM:SCOP  220->365 1ii8.1 c.37.1.12 * 3.8e-25 41.5 %
:HMM:PFM   279->323 PF00005 * ABC_tran 1.8e-08 42.2 45/118  
:HMM:PFM   90->169 PF02463 * SMC_N 1.8e-06 30.4 79/220  
:HMM:PFM   24->51 PF03193 * DUF258 0.00021 37.0 27/161  
:BLT:SWISS 14->359 YKOD_BACSU 2e-18 33.8 %
:REPEAT 2|3->155|198->349
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAL64260.1 GT:GENE AAL64260.1 GT:PRODUCT ribose ABC transporter, ATP-binding protein, putative GT:DATABASE GIB00076CH01 GT:ORG paer1 GB:ACCESSION GIB00076CH01 GB:LOCATION 1510385..1511482 GB:FROM 1510385 GB:TO 1511482 GB:DIRECTION + GB:PRODUCT ribose ABC transporter, ATP-binding protein, putative GB:NOTE Transport and binding proteins; Carbohydrates, organic alcohols, and acids GB:PROTEIN_ID AAL64260.1 GB:DB_XREF GI:18160944 LENGTH 365 SQ:AASEQ MIWAKCLTVYAGGRAVVECADFEVKPGELAVFYGPTGGGKSSIVKALAGIYKSDGEYRAERPYFIFQDVDFNLVFAYTDEEVRSVACRQTERLEISKLSMGQRQLLALRLALESGAKSVILDEPLAFLDPGTAIKVASAVKELRDAGISVLVAEHRLEFFLDADRFYLVDRGVQELGFDDLLITASRRGYGPYFTRHWERPFPIPKGRGCEVIIRWMKYPPGSKIALMGPVGSGKTYTLYALAGVVKMEGVRGCRPVGFVPQNPYLYFGDIDLSKAPREVLQWAGLDRSASPLRLSYGEARLLAVLWEVWKRPRLLLIDEPTAGVDRRYAEALGEVIANYGGTVVFATHDPIFAERYAEYKIRIG GT:EXON 1|1-365:0| BL:SWS:NREP 1 BL:SWS:REP 14->359|YKOD_BACSU|2e-18|33.8|346/547| NREPEAT 1 REPEAT 2|3->155|198->349| SEG 102->112|qrqllalrlal| BL:PDB:NREP 2 BL:PDB:REP 10->172|1mv5D|1e-09|31.5|162/241| BL:PDB:REP 217->350|2it1B|1e-10|38.8|134/361| RP:PDB:NREP 2 RP:PDB:REP 13->210|2dwoA|1e-16|11.3|195/449| RP:PDB:REP 222->362|1bifA|6e-17|12.1|140/432| HM:PFM:NREP 3 HM:PFM:REP 279->323|PF00005|1.8e-08|42.2|45/118|ABC_tran| HM:PFM:REP 90->169|PF02463|1.8e-06|30.4|79/220|SMC_N| HM:PFM:REP 24->51|PF03193|0.00021|37.0|27/161|DUF258| RP:SCP:NREP 2 RP:SCP:REP 1->172|1sgwA|3e-16|13.9|168/200|c.37.1.12| RP:SCP:REP 220->356|1sgwA|5e-17|16.1|137/200|c.37.1.12| HM:SCP:REP 5->172|1ii8.1|5.8e-34|33.9|165/370|c.37.1.12|1/2|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 220->365|1ii8.1|3.8e-25|41.5|142/370|c.37.1.12|2/2|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 152 OP:NHOMOORG 144 OP:PATTERN 221-1-2---------221---11-------1-----------1--111-11--1---1-----1--- -------1---1---------------------------1-11------------1--------11------111-----1------------------------------------------------------11--1111--1------1------------1-11------------1---1-------1--1-1111-111111-----2111------1---------11111111111111111----------------------------111------------------------------------------------------------------------1-----11---1--------------------------111--1-----------------------------------------1-1---1------------------1-----------------------------------------------------------------------------------------------------------2-------------------------------------------------------------1------1----11-------11--1----1--------1---1-----1--------------------------111--11-1111111111111111----------1---------------------------1------------------------------------------111--------------------------21111111----------------------1-----------------------------------1--1- ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PSIPRED cEEEEEEEEEEccEEEEEccEEEEccccEEEEEccccccHHHHHHHHHccccccccEEEcccEEEEccHHHHHHcccHHHHHHHHHHHHHccccHHHccHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHHHHcccEEEEEEccHHHHHHccEEEEEEccEEEEccHHHHHHcccHHHHcccHHHHccccccccccccccccccEEEccccEEEEEccccccHHHHHHHHHccccccccEEEcccEEEEccHHHccccccHHHHHHHHHHHccccccccHHHcccHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHcccEEEEEcccHHHHHHHccEEEEcc //