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Pyrobaculum aerophilum str. IM2 (paer1)
Gene : AAL64628.1
DDBJ      :             DNA primase related protein
Swiss-Prot:PRIS_PYRAE   RecName: Full=Probable DNA primase small subunit;         EC=2.7.7.-;

Homologs  Archaea  66/68 : Bacteria  0/915 : Eukaryota  61/199 : Viruses  0/175   --->[See Alignment]
d.264.1
:312 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->239 1zt2C PDBj 8e-37 44.0 %
:RPS:SCOP  6->251 1g71A  d.264.1.1 * 2e-49 32.4 %
:HMM:SCOP  1->314 1zt2A1 d.264.1.1 * 2e-79 38.4 %
:RPS:PFM   87->243 PF01896 * DNA_primase_S 2e-17 38.1 %
:HMM:PFM   87->244 PF01896 * DNA_primase_S 4.8e-29 33.3 138/145  
:BLT:SWISS 1->312 PRIS_PYRAE e-180 100.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAL64628.1 GT:GENE AAL64628.1 GT:PRODUCT DNA primase related protein GT:DATABASE GIB00076CH01 GT:ORG paer1 GB:ACCESSION GIB00076CH01 GB:LOCATION complement(1808684..1809622) GB:FROM 1808684 GB:TO 1809622 GB:DIRECTION - GB:PRODUCT DNA primase related protein GB:NOTE DNA metabolism; DNA replication, recombination, and repair GB:PROTEIN_ID AAL64628.1 GB:DB_XREF GI:18161337 LENGTH 312 SQ:AASEQ MIVEVFFRNFYRNFAKFEIDAVDKREFAFQPFSGGMVRHKSFKSLEDLRKFVVEKTPRHIYHSAAYYERPGEEDMERKGWIGADLIFDIDGDHLDTEACRESKIVSLRCLEDAREEANKLIDVLIQELDLKPTRIVFSGNRGFHIHVSSEEVMKLGSRERRELVNYLKAVGFDPSRFIAKLGRRKVVLYEEEAVGNLLRIKQGVEDARAMKVEIDEVVTQDIHRLIRAPGSLNGKTGLVALPISLKELDKGVEYIVDKAIAFRKGHLKFKFEKPVEGPVLFEKVGGREGDVKVLPAYVAIYLELQEFGKIYD GT:EXON 1|1-312:0| SW:ID PRIS_PYRAE SW:DE RecName: Full=Probable DNA primase small subunit; EC=2.7.7.-; SW:GN Name=priA; OrderedLocusNames=PAE3036; SW:KW Complete proteome; DNA replication; DNA-directed RNA polymerase;Nucleotidyltransferase; Primosome; Transcription; Transferase. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->312|PRIS_PYRAE|e-180|100.0|312/312| GO:SWS:NREP 7 GO:SWS GO:0006260|"GO:DNA replication"|DNA replication| GO:SWS GO:0003899|"GO:DNA-directed RNA polymerase activity"|DNA-directed RNA polymerase| GO:SWS GO:0016779|"GO:nucleotidyltransferase activity"|Nucleotidyltransferase| GO:SWS GO:0006269|"GO:DNA replication, synthesis of RNA primer"|Primosome| GO:SWS GO:0005658|"GO:alpha DNA polymerase:primase complex"|Primosome| GO:SWS GO:0006350|"GO:transcription"|Transcription| GO:SWS GO:0016740|"GO:transferase activity"|Transferase| BL:PDB:NREP 1 BL:PDB:REP 2->239|1zt2C|8e-37|44.0|218/320| RP:PFM:NREP 1 RP:PFM:REP 87->243|PF01896|2e-17|38.1|155/175|DNA_primase_S| HM:PFM:NREP 1 HM:PFM:REP 87->244|PF01896|4.8e-29|33.3|138/145|DNA_primase_S| GO:PFM:NREP 2 GO:PFM GO:0003896|"GO:DNA primase activity"|PF01896|IPR002755| GO:PFM GO:0006269|"GO:DNA replication, synthesis of RNA primer"|PF01896|IPR002755| RP:SCP:NREP 1 RP:SCP:REP 6->251|1g71A|2e-49|32.4|241/344|d.264.1.1| HM:SCP:REP 1->314|1zt2A1|2e-79|38.4|292/0|d.264.1.1|1/1|Prim-pol domain| OP:NHOMO 135 OP:NHOMOORG 127 OP:PATTERN 11111111111111111111111111111111111111111111111111111-11111111111-11 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- --------211-11----------------------------------1-11-1--------111---11-11-1-----11111111-12--111---1-11--111----2----1-11-111---1131-111-1--1-11-11--111------------------2--1------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 272 STR:RPRED 87.2 SQ:SECSTR #HHHHHHHHHHHccccccccTGGGccEEEEETccccEEEEccccHHHHHHHHTTTcEEEEEEEcEEEccTTcccHHHHTEEEEcEEEEccGGGTcccEETTTTEEcEHHHHHHHHHHHHHHHHHHHTcccccEEEEEcccccEEEEEccccGGGccHHHHHHHHHHHHTcccccccHHHHHHHHHHHHTcTTcccHHHHHTTccccHHHHTccccHHHHcccccEEEcTTcccTTTccccEEEEccHHHcHHHHcccG###GGHHHHHHHHHHHHH#################################### DISOP:02AL 312-313| PSIPRED cHHHHHHHHHHHHccccccccccccEEEEEEccccEEEEcccccHHHHHHHHHHHcccEEEEEcccccccccccccccccccccEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccEEEEEEccHHHHcccHHHHHHHHHHHHHccccHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHcccccccEEEEEEEEEcccccccccccEEEEEEHHHcccccccccccccccccccEEEEEcccEEEEEcccccccccccccccHHHHHHHHHHHccHHHcc //