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Pyrobaculum aerophilum str. IM2 (paer1)
Gene : AAL64645.1
DDBJ      :             conserved hypothetical protein
Swiss-Prot:             

Homologs  Archaea  7/68 : Bacteria  83/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
d.286.1
:546 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   262->350 2bkoA PDBj 3e-05 20.2 %
:RPS:SCOP  258->350 1lnqA4  d.286.1.1 * 4e-08 32.5 %
:HMM:SCOP  262->351 2fy8A2 d.286.1.1 * 4.2e-08 25.6 %
:RPS:PFM   23->159 PF03600 * CitMHS 2e-13 35.8 %
:RPS:PFM   315->411 PF00521 * DNA_topoisoIV 2e-04 25.0 %
:HMM:PFM   11->468 PF03600 * CitMHS 4.5e-29 21.4 295/349  
:BLT:SWISS 24->163 SAC1_CHLRE 2e-10 22.1 %
:BLT:SWISS 323->380 ROGDI_BOVIN 7e-04 41.8 %
:BLT:SWISS 365->445 Y532_BUCBP 7e-04 32.1 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAL64645.1 GT:GENE AAL64645.1 GT:PRODUCT conserved hypothetical protein GT:DATABASE GIB00076CH01 GT:ORG paer1 GB:ACCESSION GIB00076CH01 GB:LOCATION 1820978..1822618 GB:FROM 1820978 GB:TO 1822618 GB:DIRECTION + GB:PRODUCT conserved hypothetical protein GB:NOTE Hypothetical; Conserved GB:PROTEIN_ID AAL64645.1 GB:DB_XREF GI:18161356 LENGTH 546 SQ:AASEQ MDIWFVATVSAVLAAVTLSFKYRADIIAFVSLMALVLVGVYDLREALSYLISPAVIVLFGSMVISGVIADSGLLDRVARYISVRVRHVATASLLLYFVAGVASGFVSDVAIVLAMAVLIGDVAKRLGASPAAYVIPLAFAAAIGGRLTMVGNAGNVILLDIYQTTTGEKLNILAFTAPALLALAISVPLLLLISFYAQRFVPQLSTAVKFLVVTTEVGETLDGKTRQEVEKAYRVKILTKDRILLKYSTVLVKIAVSDIPSFMTSKDLILRPLGNNKGEHMEFLIVTQRSRLVGKTLALEPIHNVFPVSIIGIVPSGPVESLESYVFRPGDEILVLGDEKVIERIAAYYRLERSKTLVKAFNPRLAASGISGLFAAVVLSQFAPASLAFIIGTFIALLGGGKAVERLYQYVSWETLIYVGSFLAIGTAAARIDLLKPITPLLNSPEYLFVIGLFLTNTLGLIPSAVLIGPYLTTKEMLMTYVLATIPILLPPAHPAIYLIYREYGLSIKDFLKISIPATAIAILATGIAVYLYYNLPIQTPIFQLP GT:EXON 1|1-546:0| BL:SWS:NREP 3 BL:SWS:REP 24->163|SAC1_CHLRE|2e-10|22.1|140/585| BL:SWS:REP 323->380|ROGDI_BOVIN|7e-04|41.8|55/287| BL:SWS:REP 365->445|Y532_BUCBP|7e-04|32.1|81/403| TM:NTM 11 TM:REGION 1->21| TM:REGION 25->47| TM:REGION 51->73| TM:REGION 95->117| TM:REGION 126->148| TM:REGION 171->193| TM:REGION 374->396| TM:REGION 416->438| TM:REGION 448->470| TM:REGION 476->498| TM:REGION 514->536| SEG 6->19|vatvsavlaavtls| SEG 173->194|laftapallalaisvpllllis| SEG 483->500|latipillppahpaiyli| SEG 514->529|isipataiailatgia| RP:PDB:NREP 1 RP:PDB:REP 262->350|2bkoA|3e-05|20.2|89/190| RP:PFM:NREP 2 RP:PFM:REP 23->159|PF03600|2e-13|35.8|137/340|CitMHS| RP:PFM:REP 315->411|PF00521|2e-04|25.0|96/434|DNA_topoisoIV| HM:PFM:NREP 1 HM:PFM:REP 11->468|PF03600|4.5e-29|21.4|295/349|CitMHS| GO:PFM:NREP 9 GO:PFM GO:0015137|"GO:citrate transmembrane transporter activity"|PF03600|IPR004680| GO:PFM GO:0015746|"GO:citrate transport"|PF03600|IPR004680| GO:PFM GO:0016021|"GO:integral to membrane"|PF03600|IPR004680| GO:PFM GO:0055085|"GO:transmembrane transport"|PF03600|IPR004680| GO:PFM GO:0003677|"GO:DNA binding"|PF00521|IPR002205| GO:PFM GO:0003918|"GO:DNA topoisomerase (ATP-hydrolyzing) activity"|PF00521|IPR002205| GO:PFM GO:0005524|"GO:ATP binding"|PF00521|IPR002205| GO:PFM GO:0005694|"GO:chromosome"|PF00521|IPR002205| GO:PFM GO:0006265|"GO:DNA topological change"|PF00521|IPR002205| RP:SCP:NREP 1 RP:SCP:REP 258->350|1lnqA4|4e-08|32.5|83/92|d.286.1.1| HM:SCP:REP 262->351|2fy8A2|4.2e-08|25.6|90/0|d.286.1.1|1/1|TrkA C-terminal domain-like| OP:NHOMO 113 OP:NHOMOORG 92 OP:PATTERN -----1-1----------111-------1------------------------------1-------- --1---------------------1-----------------------------------------------------------------1--1---------1----1-------------------------------1-------1-11-------------------------------1--------1---------1------------------1--1--------------------------------------------------------------------------------------------------------------------------------1------------11-----------2----------------------------------------1--11--1111111------12-1-----------------------------11---------------------33---------------------------------------------------------------------------------------------1-2-----11---------------------------------1--1-----------------------------------1-1---------------------------------1332--1--2-2-2112222121-2----------111111111111---111--1---------1111--1-------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------1------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 89 STR:RPRED 16.3 SQ:SECSTR #####################################################################################################################################################################################################################################################################TTccccHHHHHHHHHcccEEEEEEccTTcTTTTccHHHHTHHHHHccEEEEEEETTEEcccTTccccTTcEEEEEEcHHHHHHHHHHHT#################################################################################################################################################################################################### DISOP:02AL 267-276, 317-324| PSIPRED cHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccccEEEEEEEEEEEccHHHHHHHHHcccHHHHHcccccccEEEEEEEcccccEEcccHHHccHHHHccEEEEEEEEcccEEcccEEEEEEccEEEEEccHHHHHHHHHccccccccHHcccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc //