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Pyrobaculum aerophilum str. IM2 (paer1)
Gene : AAL64842.1
DDBJ      :             transcription initiation factor IIB (TFIIB)
Swiss-Prot:             

Homologs  Archaea  64/68 : Bacteria  0/915 : Eukaryota  16/199 : Viruses  0/175   --->[See Alignment]
a.74.1g.41.3
:298 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   10->53 1pftA PDBj 1e-09 46.5 %
:BLT:PDB   95->231 1d3uB PDBj 1e-04 26.9 %
:RPS:PDB   10->54 1dl6A PDBj 3e-07 36.4 %
:RPS:PDB   108->298 1aisB PDBj 2e-12 21.9 %
:RPS:SCOP  10->53 1pftA  g.41.3.1 * 3e-13 46.5 %
:RPS:SCOP  106->198 1aisB1  a.74.1.2 * 2e-07 21.3 %
:RPS:SCOP  200->290 1c9bA2  a.74.1.2 * 4e-10 18.6 %
:HMM:SCOP  1->59 1dl6A_ g.41.3.1 * 8.4e-14 41.4 %
:HMM:SCOP  104->193 1aisB2 a.74.1.2 * 7.7e-12 32.6 %
:HMM:SCOP  200->299 1aisB2 a.74.1.2 * 5.2e-16 28.4 %
:RPS:PFM   14->53 PF08271 * TF_Zn_Ribbon 8e-10 51.3 %
:HMM:PFM   12->54 PF08271 * TF_Zn_Ribbon 7.6e-18 50.0 42/43  
:HMM:PFM   206->274 PF00382 * TFIIB 1.2e-09 29.7 64/71  
:HMM:PFM   154->179 PF00440 * TetR_N 0.00033 26.9 26/47  
:BLT:SWISS 3->298 TF2B_METTH 5e-23 30.8 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAL64842.1 GT:GENE AAL64842.1 GT:PRODUCT transcription initiation factor IIB (TFIIB) GT:DATABASE GIB00076CH01 GT:ORG paer1 GB:ACCESSION GIB00076CH01 GB:LOCATION complement(1993374..1994270) GB:FROM 1993374 GB:TO 1994270 GB:DIRECTION - GB:PRODUCT transcription initiation factor IIB (TFIIB) GB:NOTE Transcription; Transcription factors GB:PROTEIN_ID AAL64842.1 GB:DB_XREF GI:18161568 LENGTH 298 SQ:AASEQ MTRKLIFELEEYACPACGAVNDVIVDYERGQVICKSCGVVLKDGIADLGPEWRKPESSRAYSGPIGSSIGDIEFGNVKVADKLKAISLKKFSRPISTPLERVESDVREFLESAKEKLSIPKNVIEETVMLYKKLYDAGYKAPRLESYAAVLYFVLKKHGIAAVTLKKIIEELGIDRSNFISAYMELMSTANKLGIKPPRVDPRVYIPKIVSALGIGDEKSAEVQRIAVDILRYIISVPRIRNGRKPQVLAAAAVFYACYIAGVEVTQKEVAKAADSTEGPVRELLKDLSDVIYVEVTV GT:EXON 1|1-298:0| BL:SWS:NREP 1 BL:SWS:REP 3->298|TF2B_METTH|5e-23|30.8|286/310| TM:NTM 1 TM:REGION 246->268| SEG 250->261|aaaavfyacyia| BL:PDB:NREP 2 BL:PDB:REP 10->53|1pftA|1e-09|46.5|43/50| BL:PDB:REP 95->231|1d3uB|1e-04|26.9|130/201| RP:PDB:NREP 2 RP:PDB:REP 10->54|1dl6A|3e-07|36.4|44/58| RP:PDB:REP 108->298|1aisB|2e-12|21.9|183/193| RP:PFM:NREP 1 RP:PFM:REP 14->53|PF08271|8e-10|51.3|39/43|TF_Zn_Ribbon| HM:PFM:NREP 3 HM:PFM:REP 12->54|PF08271|7.6e-18|50.0|42/43|TF_Zn_Ribbon| HM:PFM:REP 206->274|PF00382|1.2e-09|29.7|64/71|TFIIB| HM:PFM:REP 154->179|PF00440|0.00033|26.9|26/47|TetR_N| GO:PFM:NREP 2 GO:PFM GO:0008270|"GO:zinc ion binding"|PF08271|IPR013137| GO:PFM GO:0045449|"GO:regulation of transcription"|PF08271|IPR013137| RP:SCP:NREP 3 RP:SCP:REP 10->53|1pftA|3e-13|46.5|43/50|g.41.3.1| RP:SCP:REP 106->198|1aisB1|2e-07|21.3|89/98|a.74.1.2| RP:SCP:REP 200->290|1c9bA2|4e-10|18.6|86/109|a.74.1.2| HM:SCP:REP 1->59|1dl6A_|8.4e-14|41.4|58/0|g.41.3.1|1/1|Zinc beta-ribbon| HM:SCP:REP 104->193|1aisB2|7.7e-12|32.6|86/0|a.74.1.2|1/2|Cyclin-like| HM:SCP:REP 200->299|1aisB2|5.2e-16|28.4|95/0|a.74.1.2|2/2|Cyclin-like| OP:NHOMO 129 OP:NHOMOORG 80 OP:PATTERN --1-21212222222222222221433344221111-1111141111111111211111112221135 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ---1------------------------------------------------------------------------------------------------1----------11112------1------------------------------1-1111------------------------------------111- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 258 STR:RPRED 86.6 SQ:SECSTR #########cccccTTccccccEEEccccccEEcTTTccEEccccccccccccc##########################HHHHHHHHHHccHHcccHHHHHHHHHHHHHHHHHHHHTccHHHHHHHHHHHHHHHTTTTTTTcHHHHHHHHHHHHHHHHTccccHHHHHHHTTccHHHHHHHHHHHHHHHHHTTccTTTTcccGGGGHHHHHHHHTccHHHHHHHHHHHHHHTTccT#####TccHHHHHHHHHHHHHHHTTccccHHHHHHHHTccHHHHHHHHHHHHHHHTccccc DISOP:02AL 1-9, 58-66, 79-103| PSIPRED ccHHHHHHHHHcccccccccccEEEEcccccEEEccccEEEEcccccccccEEccccccccccccccccccccccccccccHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHHHcccccc //