Pyrobaculum aerophilum str. IM2 (paer1)
Gene : AAL64948.1
DDBJ : transcription associated protein, conjectural
Swiss-Prot:
Homologs Archaea 9/68 : Bacteria 0/915 : Eukaryota 0/199 : Viruses 0/175 --->[See Alignment]
g.41.3
:89 amino acids
:PSIPRED
:DISOPRED
:RPS:SCOP 1->30 1i3qI1 g.41.3.1 * 2e-05 26.7 %
:HMM:PFM 1->30 PF02150 * RNA_POL_M_15KD 1.3e-06 37.9 29/35
:HMM:PFM 23->76 PF09538 * FYDLN_acid 8.4e-06 33.3 54/106
:BLT:SWISS 1->57 RPOM_SULAC 3e-09 45.6 %
:COIL
:SEG
SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAL64948.1
GT:GENE AAL64948.1
GT:PRODUCT transcription associated protein, conjectural
GT:DATABASE GIB00076CH01
GT:ORG paer1
GB:ACCESSION GIB00076CH01
GB:LOCATION 2091399..2091668
GB:FROM 2091399
GB:TO 2091668
GB:DIRECTION +
GB:PRODUCT transcription associated protein, conjectural
GB:NOTE Transcription; DNA-dependent RNA polymerase
GB:PROTEIN_ID AAL64948.1
GB:DB_XREF GI:18161684
LENGTH 89
SQ:AASEQ MRFCPRDGTLMVPYKKDGVTVLKCPKCGYEVKLSEKVKEAYRQKAEVAEDKKRGVMIAEERRAEYDQEEMEELRRQLLENLQETEREGE
GT:EXON 1|1-89:0|
BL:SWS:NREP 1
BL:SWS:REP 1->57|RPOM_SULAC|3e-09|45.6|57/111|
COIL:NAA 34
COIL:NSEG 1
COIL:REGION 56->89|
SEG 67->87|qeemeelrrqllenlqetere|
HM:PFM:NREP 2
HM:PFM:REP 1->30|PF02150|1.3e-06|37.9|29/35|RNA_POL_M_15KD|
HM:PFM:REP 23->76|PF09538|8.4e-06|33.3|54/106|FYDLN_acid|
RP:SCP:NREP 1
RP:SCP:REP 1->30|1i3qI1|2e-05|26.7|30/49|g.41.3.1|
OP:NHOMO 14
OP:NHOMOORG 9
OP:PATTERN --1---1--------1-122222--------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
DISOP:02AL 36-53, 78-89|
PSIPRED cccccccccEEEEEEcccEEEEEcccccccccccHHHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHccc
//
[GTOP]
