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Pyrobaculum aerophilum str. IM2 (paer1)
Gene : AAL65004.1
DDBJ      :             DNA-directed RNA polymerase subunit E' (rpoE1)
Swiss-Prot:             

Homologs  Archaea  68/68 : Bacteria  0/915 : Eukaryota  71/199 : Viruses  0/175   --->[See Alignment]
b.40.4d.230.1
:191 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->185 1go3M PDBj 9e-38 43.0 %
:RPS:PDB   3->178 2c35B PDBj 8e-21 22.9 %
:RPS:SCOP  3->79 1go3E2  d.230.1.1 * 7e-22 40.3 %
:RPS:SCOP  80->189 1go3E1  b.40.4.5 * 6e-11 42.4 %
:HMM:SCOP  2->78 2c35B2 d.230.1.1 * 1.4e-19 44.2 %
:HMM:SCOP  80->178 1y14B1 b.40.4.5 * 4.9e-17 35.2 %
:RPS:PFM   10->78 PF03876 * RNA_pol_Rpb7_N 8e-12 44.9 %
:HMM:PFM   9->78 PF03876 * RNA_pol_Rpb7_N 2.2e-22 42.9 70/70  
:HMM:PFM   83->154 PF00575 * S1 8e-12 33.3 60/74  
:BLT:SWISS 3->190 RPOE_SULAC 3e-38 40.1 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAL65004.1 GT:GENE AAL65004.1 GT:PRODUCT DNA-directed RNA polymerase subunit E' (rpoE1) GT:DATABASE GIB00076CH01 GT:ORG paer1 GB:ACCESSION GIB00076CH01 GB:LOCATION 2134271..2134846 GB:FROM 2134271 GB:TO 2134846 GB:DIRECTION + GB:PRODUCT DNA-directed RNA polymerase subunit E' (rpoE1) GB:NOTE Transcription; DNA-dependent RNA polymerase GB:PROTEIN_ID AAL65004.1 GB:DB_XREF GI:18161744 LENGTH 191 SQ:AASEQ MPFRLVEAEDYVRVPPTEFGKPLEDIALSQLKSRYEGKVLREVGYIVAVLNVKVGREGKIVFGDGGTYHRAVFTMLAFMPLDGEVVEGVVENAREMGMLVRIGPILGFINKIHIMDDPNIFFDASTKSYIGERTKRRVSVGDVVRARITGVSFTTPREGTDLLIRVTLTMRSPGLGKLEWVKEKKPAAKKA GT:EXON 1|1-191:0| BL:SWS:NREP 1 BL:SWS:REP 3->190|RPOE_SULAC|3e-38|40.1|182/183| BL:PDB:NREP 1 BL:PDB:REP 3->185|1go3M|9e-38|43.0|172/174| RP:PDB:NREP 1 RP:PDB:REP 3->178|2c35B|8e-21|22.9|170/171| RP:PFM:NREP 1 RP:PFM:REP 10->78|PF03876|8e-12|44.9|69/70|RNA_pol_Rpb7_N| HM:PFM:NREP 2 HM:PFM:REP 9->78|PF03876|2.2e-22|42.9|70/70|RNA_pol_Rpb7_N| HM:PFM:REP 83->154|PF00575|8e-12|33.3|60/74|S1| GO:PFM:NREP 2 GO:PFM GO:0003899|"GO:DNA-directed RNA polymerase activity"|PF03876|IPR005576| GO:PFM GO:0006350|"GO:transcription"|PF03876|IPR005576| RP:SCP:NREP 2 RP:SCP:REP 3->79|1go3E2|7e-22|40.3|77/78|d.230.1.1| RP:SCP:REP 80->189|1go3E1|6e-11|42.4|99/99|b.40.4.5| HM:SCP:REP 2->78|2c35B2|1.4e-19|44.2|77/0|d.230.1.1|1/1|N-terminal, heterodimerisation domain of RBP7 (RpoE)| HM:SCP:REP 80->178|1y14B1|4.9e-17|35.2|91/0|b.40.4.5|1/1|Nucleic acid-binding proteins| OP:NHOMO 182 OP:NHOMOORG 139 OP:PATTERN 11111111111111111111111111111111111111111111111111111111111111111111 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ---1311-1-----------------------------------------------1-----21122221112121222222221122-211--2111-1111111----2------------------------------1-----1--------------1-1--2112---1-2--E-11-1112--11-2-1111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 189 STR:RPRED 99.0 SQ:SECSTR ##EEEEEEEEEEEEcGGGccccHHHHHHHHHHHHHTTcEETTTEEEEEEEEEEEEccccccTTcccEEEEEEEEEEEEcccTTcEEEEEEEEEETTEEEEEETTEEEEEEGGGccTTEEEEccccccEEEETTcccEEETTcEEEEEEEEEEEETTEccccccEEEEEEcccTTcEEcGGTccTccTTccc DISOP:02AL 183-184, 186-191| PSIPRED ccEEEEEEEEEEEccHHHccccHHHHHHHHHHHHHccEEEccccEEEEEEEEEEcccEEEEEcccEEEEEEEEEEEEEEEHHcEEEEEEEEEEcccEEEEEEccEEEEEEcccccccccccccccccEEEEccccEEEEcccEEEEEEEEEEcccccccccccEEEEEEEcccccccccHHHHHHHHcccc //