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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ20867.1
DDBJ      :             Putative secretory autotransporter
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  12/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
b.69.10f.4.5
:692 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   105->260 1l0qA PDBj 3e-07 38.5 %
:RPS:SCOP  370->618 1uynX  f.4.5.1 * 9e-08 14.3 %
:HMM:SCOP  11->274 1jofA_ b.69.10.1 * 2.1e-13 23.8 %
:HMM:SCOP  320->643 1uynX_ f.4.5.1 * 2.4e-15 20.9 %
:RPS:PFM   149->271 PF08450 * SGL 7e-05 31.9 %
:RPS:PFM   367->613 PF03797 * Autotransporter 1e-06 24.1 %
:HMM:PFM   384->616 PF03797 * Autotransporter 4.8e-16 20.3 227/265  
:REPEAT 2|138->193|195->246
:REPEAT 2|22->64|88->137
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ20867.1 GT:GENE AAZ20867.1 GT:PRODUCT Putative secretory autotransporter GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(50650..52728) GB:FROM 50650 GB:TO 52728 GB:DIRECTION - GB:PRODUCT Putative secretory autotransporter GB:PROTEIN_ID AAZ20867.1 GB:DB_XREF GI:71061864 LENGTH 692 SQ:AASEQ MFTVTQRKVSAISSVYAHINEYDLSTPFNVSTKTYASDDEVCILNSGDTTSGPISAITDLEFSNDGLMLFVSRGNAKGTANDDRVFRFDLTSPYDVSTCAFANQTSDLDTGTLQDGSNAGDITEGTNNRLQGIEINNDGTKLFAIFHGATGQDTRLLEYQLSTAYDLSTISIITDAGIELNDEVSNPQGIRFSPDGKRFWAVDHNGSTQDVTQISLDVAFSTSSFTIDGTVSISSDITQPRGIAFSAVGLKMYIGSDKDENGKDEVFEFDLVCPFNIIEGKCPSITTGVRTGIAIAQIEVATRTIEHSTDTALNRLKWIRRNKDNQNLTNLNLDLNFTNQMLASLTKVVKTSATTKKKDKQQDVFYWSEGSIAVGRVGETNVSSFKKIKTNAITVGADKFTKNNGIRGLAFRFGKNDVDVGSAGSNLDTNTYNLTHYSSSPIEDDTKFIDTVIGVGVLNSDILSVLDGERVTADRKGRQIYGTIKLKDEIKKNNLILIPSGQIDLGYTLLDGYQESGNTAMKFKKQGIRSRNARLSIAAVDELKNEKYKIRKHGKLEYKANLNRSSNIKYSYVSDATSGEFDTKLNSGALHNLNGELGIDIILPDSFSIFLIYERNQALGTGHTDKIHLAIGYLPNRKTNYAFKLAGSENLGSEFKISKNINDFEIDFKLNNQDVLKPNTFDEATINLKKIF GT:EXON 1|1-692:0| NREPEAT 2 REPEAT 2|138->193|195->246| REPEAT 2|22->64|88->137| SEG 322->340|nkdnqnltnlnldlnftnq| SEG 346->360|tkvvktsattkkkdk| BL:PDB:NREP 1 BL:PDB:REP 105->260|1l0qA|3e-07|38.5|117/385| RP:PFM:NREP 2 RP:PFM:REP 149->271|PF08450|7e-05|31.9|113/243|SGL| RP:PFM:REP 367->613|PF03797|1e-06|24.1|241/263|Autotransporter| HM:PFM:NREP 1 HM:PFM:REP 384->616|PF03797|4.8e-16|20.3|227/265|Autotransporter| RP:SCP:NREP 1 RP:SCP:REP 370->618|1uynX|9e-08|14.3|223/279|f.4.5.1| HM:SCP:REP 11->274|1jofA_|2.1e-13|23.8|223/0|b.69.10.1|1/1|3-carboxy-cis,cis-mucoante lactonizing enzyme| HM:SCP:REP 320->643|1uynX_|2.4e-15|20.9|296/0|f.4.5.1|1/1|Autotransporter| OP:NHOMO 44 OP:NHOMOORG 13 OP:PATTERN ------------------------------------------------------------------S- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1----1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2----------------------------------------------4-----------------------------------------11-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1111-11--------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 117 STR:RPRED 16.9 SQ:SECSTR ########################################################################################################TTTEEEEEEEccccEEEE############EcTTccEEEEEE###############GGGTEEEEEETTTTEEEEEEEccccEEEEEEcTTccEEE#EEETTTEEEE########EETTTTEEEEEEEccc###cEEEEEEcTTccEEEEEETTTT################################################################################################################################################################################################################################################################################################################################################################################################################################################ DISOP:02AL 3-7, 350-359, 375-384, 419-425, 467-474| PSIPRED ccEEEcHHcccccccEEEEEEEcccccEEEEEEEEEcccEEEEEccccccccccccccEEEEcccccEEEEEccccccEEEccccEEEEEcccEEEEEEcccccccccccEEEEccccEEEEEEccccccccEEEcccccEEEEEEcccccccccccHHcccccccEEEEEcccccccEEcccccccccEEEcccccEEEEEcccccccccEEEEEEEEcccEEEEEEEEEEccccccccccEEEcccccEEEEEccccccccccEEEEEEEEEEEEEEcccHHHHcccccccccccEEEEEEEEEcccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHccccccccccccccEEEEEEEEEEccccccccccccEEEEEcEEEEEEEEEEcccEEEEEEEEEEEEccccccccccEEEEEEEEEEEEEEcccccEEEEEEEEEEEEEEEEEEEEEEccEEEEEEccEEEEEEEEEEEEEccccEEEEEEEEEEEEEEEEEEEEcccHHHEEEEccEEEEEEEcEEEEEEEEEEEccEEEEEEEEEEEEEEEccccccEEEEEEEEEccEEEEEEcccccccEEEEEEEEEEEccccEEEEEEEEEccccccccEEEEEEEEEcccccccEEEEEEcccccccEEEEEccccEEEEEEEEccccEEcccccccEEEEEEEEc //