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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ20869.1
DDBJ      :             Outer membrane autotransporter
Swiss-Prot:             

Homologs  Archaea  3/68 : Bacteria  23/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
b.68.6b.69.10f.4.5
:723 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   52->281 1l0qA PDBj 8e-10 30.9 %
:RPS:PDB   458->605 3btpA PDBj 2e-05 9.1 %
:RPS:SCOP  55->300 2ghsA1  b.68.6.1 * 5e-06 16.0 %
:RPS:SCOP  375->671 1uynX  f.4.5.1 * 7e-11 16.7 %
:HMM:SCOP  46->281 1jofA_ b.69.10.1 * 4.6e-22 24.2 %
:HMM:SCOP  352->671 1uynX_ f.4.5.1 * 6.2e-38 28.9 %
:RPS:PFM   52->281 PF10282 * Muc_lac_enz 1e-06 24.5 %
:RPS:PFM   402->605 PF03797 * Autotransporter 3e-17 31.9 %
:HMM:PFM   398->650 PF03797 * Autotransporter 8.3e-29 25.9 251/265  
:HMM:PFM   46->103 PF08450 * SGL 0.00024 23.6 55/246  
:HMM:PFM   165->197 PF08450 * SGL 0.00062 15.2 33/246  
:BLT:SWISS 131->209 Y049_PSEAE 5e-04 29.1 %
:BLT:SWISS 304->649 OMPB_RICPR 4e-10 24.2 %
:REPEAT 5|52->78|79->139|140->190|191->240|241->297
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ20869.1 GT:GENE AAZ20869.1 GT:PRODUCT Outer membrane autotransporter GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 53177..55348 GB:FROM 53177 GB:TO 55348 GB:DIRECTION + GB:PRODUCT Outer membrane autotransporter GB:PROTEIN_ID AAZ20869.1 GB:DB_XREF GI:71061866 LENGTH 723 SQ:AASEQ MLNLIKKSKKLIIKGALKLKVFLVLFSLFFSSLALAEPTFIANFNVQDKETSPTGITFNPDGTKMFITGINMRKILQYNLTTAFDVTSAAFEKSVLIQVEQDKPQDVKFNSDGTVIFLLGTGTGVIDGVDAARNGIHRWSLSTPYDIGSITPANTTFTEVGGDNPRGLAFNNDGTKMFILDNTAQRVEEYNLSTPYNPDTKGSVANTLGNARSASHQGLGFNNDGSKIFIVKQDNKIDEYALSTAFDLSSATLTGTVSPTFPVTNKRLSGFAFNSSGTKMYHLDWHTLTDADNVNEYSLSCPFAVVSSSTCGAPQKNKDVRGVVDAQINTAKNFAKDSSQSALKRLSILRANKYYNASAQNIELNFQNELLKKVSNNVLSSAQAKLNPLQKLDQILPNDWEVWSEGSISFGKIGESSLSSAQDIDSLGITVGVDTKMDDDKILGVALRVGSTDVDVGTFGSKVDTNALSLSLYGINSLENSNYLKHVFGVSYLDSNIARKYDGNTDANKGEREGKQVFGSLNFGKEYENSDLIITPTGRIDGSYTALNGYTESGIAALSYNDQDISSLMASLGVLIDQDVDLENSTVRSRINLEYSKEFASSSKVVTSYVSNSESFEYQADNKNRDIYTAGLGLDFKHDQGLIISTDYERQQIKGHGYINKFTLSAGFLYRKETEFALGLDEEMTSSFKISKALGVFDLEFDLENNFSNQENHNANLSILSKF GT:EXON 1|1-723:0| BL:SWS:NREP 2 BL:SWS:REP 131->209|Y049_PSEAE|5e-04|29.1|79/553| BL:SWS:REP 304->649|OMPB_RICPR|4e-10|24.2|339/1643| NREPEAT 1 REPEAT 5|52->78|79->139|140->190|191->240|241->297| SEG 2->36|lnlikkskkliikgalklkvflvlfslffsslala| BL:PDB:NREP 1 BL:PDB:REP 52->281|1l0qA|8e-10|30.9|181/385| RP:PDB:NREP 1 RP:PDB:REP 458->605|3btpA|2e-05|9.1|143/386| RP:PFM:NREP 2 RP:PFM:REP 52->281|PF10282|1e-06|24.5|208/311|Muc_lac_enz| RP:PFM:REP 402->605|PF03797|3e-17|31.9|204/263|Autotransporter| HM:PFM:NREP 3 HM:PFM:REP 398->650|PF03797|8.3e-29|25.9|251/265|Autotransporter| HM:PFM:REP 46->103|PF08450|0.00024|23.6|55/246|SGL| HM:PFM:REP 165->197|PF08450|0.00062|15.2|33/246|SGL| RP:SCP:NREP 2 RP:SCP:REP 55->300|2ghsA1|5e-06|16.0|225/295|b.68.6.1| RP:SCP:REP 375->671|1uynX|7e-11|16.7|270/279|f.4.5.1| HM:SCP:REP 46->281|1jofA_|4.6e-22|24.2|207/0|b.69.10.1|1/1|3-carboxy-cis,cis-mucoante lactonizing enzyme| HM:SCP:REP 352->671|1uynX_|6.2e-38|28.9|294/0|f.4.5.1|1/1|Autotransporter| OP:NHOMO 61 OP:NHOMOORG 26 OP:PATTERN ---------------------------------------------------11-------------U- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1----1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2--------------------------------------------------------------------------2----------------------------------------------4-----------------------------------------11-----------------1------------------11-------------------------1------------------------------------------------------------------------1------------------------------------------------------------------------------------------------2---------------------------------11--------1-1---------------------------1111-11--------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 324 STR:RPRED 44.8 SQ:SECSTR ###################################################ccEEEEEcTTccEEEEEEGGGTEE#########EEEETTTTEEEEEEEccccEEEEEEcTTccEEEEEETTT#EEEEEETTTT################EEEEEEEc###cccEEEEEEcTTccEEEEEETTTTEEEEEETTTT#######EEEEEEEccccE##EEEEEcTTccEEEEEETTTEE######EEEE####TTTTEEEEEEEc#ccEEEEEEEcTTccEEE################################################################################################################################################################################cccccccccEEEEHHHHHHHcTTcHHHHHHHTTccGGGEEEEcTTccEHHHHHHcHHHHHHHHHHHTccGGGccccccccccEEEEcccEEEcGGGccTT###TcccTTEEEEEEcTTccEEEEEEEHHHHHHTTccc##cHHHHHHc###################################################################################################################### DISOP:02AL 1-7, 415-418, 453-462| PSIPRED cccHHHcccEEEEEEcccEEEEEEEEccEEEEEccccccEEcEEcccccccccEEEEEEccccEEEEEcccccEEEEcccEEEEEccccEEEEEEEEEEccccEEEEEEEccccEEEEEEccccEEEEEEccccccEEEEEEEcccEEEEEEcccEEEEEEccccccEEEEccccEEEEEEccccEEEEEEcccccccccEEEEEEEEEccccccccEEEEcccccEEEEEEccccEEEcccEEEEEEEcccEEEEEEEEEEEccccccEEEEEccccEEEEEEccEEEEEEEEEEEEccccEEEEEEEccccEEEEcccccccccccccccHHHHHHHHHHHHEEEEcccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEccccccccccccEEEEEccEEEEEEEEEEcccEEEEEEEEEEEEEEEEccccccEEEEEEEEEEEEEEEccccEEEEEEEEEEEEEEEEEEEEcccccEEEEEEEcEEEEEEEEEEEEEccccEEEEEEEEEEEEEEEcccEEEEccEEEEEEcccEEEEEEEEEEEEEEEEEEccEEEEEEEEEEEEEEEcccccEEEEEEEcccEEEEEccccccEEEEEEEEEEEEEcccEEEEEEEEEccccccccEEEEEEEEEEEEEEEcEEEEcccHHHcccEEEEHEEEEEEEEEEEcccccccccccccEEEEEEc //