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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ20872.1
DDBJ      :             probable transcription regulatory protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  1/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.5
:322 amino acids
:PSIPRED
:DISOPRED
:HMM:SCOP  68->134 1ft9A1 a.4.5.4 * 0.00051 25.4 %
:HMM:PFM   82->117 PF01047 * MarR 5.5e-06 36.1 36/59  
:HMM:PFM   248->272 PF09339 * HTH_IclR 0.00017 44.0 25/52  
:BLT:SWISS 47->177 COAA_LACBA 6e-05 25.6 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ20872.1 GT:GENE AAZ20872.1 GT:PRODUCT probable transcription regulatory protein GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 58036..59004 GB:FROM 58036 GB:TO 59004 GB:DIRECTION + GB:PRODUCT probable transcription regulatory protein GB:PROTEIN_ID AAZ20872.1 GB:DB_XREF GI:71061869 LENGTH 322 SQ:AASEQ MIKITNKTNEEQIFKIINENFSQLAPSYYSLVTHWFINAYKNFKGIDKYIILIYLINKDFIHYRKNGLMVDYDTFYKDKTLEIPNINISDIARDLLIPKENVRRKISELEKKGIIKRAGKKIFVERPGFIQTKANITLKDFSSLVSTFSEILKDKKIIKEPLNTDQISNLIKENFSFCWYQFYKFLFIFSNRWKTDTKTQDLETICVGLIVMINTVQNRGFKDKNLDRQKYFKAVQKSNHIGINAFSIADITGIPRATVVRKLQFLIENKFLNISEKKLYNFAMGTQTKQFKVLTKLQDKNMKALGKFLYKVFNQIKIINTN GT:EXON 1|1-322:0| BL:SWS:NREP 1 BL:SWS:REP 47->177|COAA_LACBA|6e-05|25.6|125/307| SEG 111->122|kkgiikragkki| HM:PFM:NREP 2 HM:PFM:REP 82->117|PF01047|5.5e-06|36.1|36/59|MarR| HM:PFM:REP 248->272|PF09339|0.00017|44.0|25/52|HTH_IclR| HM:SCP:REP 68->134|1ft9A1|0.00051|25.4|67/80|a.4.5.4|1/2|"Winged helix" DNA-binding domain| OP:NHOMO 2 OP:NHOMOORG 1 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-7| PSIPRED cEEEcccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccHHHEEEEEEEccHHHHHHcccEEEEEHHHccccEEEcccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccEEEEEccccEEEEccEEHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccEEEEEcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHHHHHcEEEEEcc //