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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ20906.1
DDBJ      :             probable short-chain dehydrogenase
Swiss-Prot:             

Homologs  Archaea  32/68 : Bacteria  679/915 : Eukaryota  123/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:250 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->239 2c7vA PDBj 5e-24 32.8 %
:RPS:PDB   6->240 2ae1A PDBj 1e-27 19.2 %
:RPS:SCOP  6->245 1bdbA  c.2.1.2 * 4e-30 17.9 %
:HMM:SCOP  2->244 1uh5A_ c.2.1.2 * 4.8e-45 29.5 %
:RPS:PFM   7->121 PF00106 * adh_short 7e-09 26.1 %
:HMM:PFM   6->170 PF00106 * adh_short 1.9e-21 16.7 162/167  
:BLT:SWISS 1->239 FABG_CUPLA 3e-19 30.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ20906.1 GT:GENE AAZ20906.1 GT:PRODUCT probable short-chain dehydrogenase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 97348..98100 GB:FROM 97348 GB:TO 98100 GB:DIRECTION + GB:PRODUCT probable short-chain dehydrogenase GB:PROTEIN_ID AAZ20906.1 GB:DB_XREF GI:71061903 LENGTH 250 SQ:AASEQ MEANKIIITGAATRMGAAIAKKLSGPGVEMVIHYNSSKSEAEKLQKELSKNKTKVYLVKGNLAKEQDLKKIIKFSKLKLKYFDCLINNASLFENDSLKNFSSKSWNQHIDVNLKAPAYLTKEFSKNVKGKNNNIINIIDQRVFKLTPFFFSYTLSKTGLYTLTKTSAMELAPNIRVNGIAPGPTIKNKRQTDMHFKKQYLATPLKQQVNVQDICSAVDFFIKNSSITGQVIAIDSGQSLNWQTPDVIGKE GT:EXON 1|1-250:0| BL:SWS:NREP 1 BL:SWS:REP 1->239|FABG_CUPLA|3e-19|30.4|237/320| SEG 68->80|lkkiikfsklklk| SEG 131->138|nnniinii| BL:PDB:NREP 1 BL:PDB:REP 2->239|2c7vA|5e-24|32.8|238/251| RP:PDB:NREP 1 RP:PDB:REP 6->240|2ae1A|1e-27|19.2|234/252| RP:PFM:NREP 1 RP:PFM:REP 7->121|PF00106|7e-09|26.1|115/169|adh_short| HM:PFM:NREP 1 HM:PFM:REP 6->170|PF00106|1.9e-21|16.7|162/167|adh_short| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 1 RP:SCP:REP 6->245|1bdbA|4e-30|17.9|240/267|c.2.1.2| HM:SCP:REP 2->244|1uh5A_|4.8e-45|29.5|241/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 1799 OP:NHOMOORG 834 OP:PATTERN --1-1-2522222133-2111---1--111-1--------------11--11--1-----12213--2 228----1--1---4---------12-------232-122--1---1--11-211------21-11-3-1----------1-221213---1---11--225133736-21------111----122222222231111221111-22433311111----1223113352111112112112111--4412498888886956679A666AA8B7696553541333332583111111111111114441331213312-1-112223122133---222-11111-111111111111111111111111111---1111332283332223222225512321-21-1211-11----133122421--214511211-113372112-1311222222222225-221225212421D6657868865731322211212441122222222121311331121222211----11---1-1---1111422231-32115231341222222343221-131512221111112231212143121111311-------11211-1511-111--32211132262121111224-1111111111111-11111111121-223221224162-1222221311113232211----1-111----3212-22-11--------1---------1--------2212132221222222222121228---------221222222222111112-1-2332121321112-1-------1111211111--32----13332121143342222212222-112-----32112111-1--11111111122331133----------1----------1--------------21-1-12121121 1---121---1--132254424223231111111-1-1111111113231335411111----14--1-2--213-----1---2----4322-211-1----111-2--721--1--1---2--1-1-382-212--1-1--2--2-111------12HC533843122823122------12221152-2221---1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 249 STR:RPRED 99.6 SQ:SECSTR cTTcEEEEETcccHHHHHHHHHHHTTTcEEEEEEcccHHHHHHHHHHHHHTTccEEEEEccTTcHHHHHHHHHHHHHHTTTcccEEEcccccccccGGGccHHHHHHHHHHHTHHHHHHHHHHHHHHTTccEEEEEEccGGGTcccTTcHHHHHHHHHHHHHHHHHHHHTGGTEEEEEEEEcccccccHHHHHHHHHHHHTccccccccHHHHHHHHHHHGGGTTccccEEEEcTTGGGcccTTcTccT# DISOP:02AL 249-250| PSIPRED ccccEEEEEccccHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHHHHccccEEEEcccccccccHHHccHHHHHHHHHHccHHHHHHHHHHHHHHHHccccEEEEEHHEEEccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHccHHHHccEEEEEcccEEEccccccccccc //