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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ20930.1
DDBJ      :             tetratricopeptide repeat (tpr) family protein
Swiss-Prot:             

Homologs  Archaea  3/68 : Bacteria  265/915 : Eukaryota  18/199 : Viruses  0/175   --->[See Alignment]
a.118.8
:561 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   373->508 2fo7A PDBj 4e-10 29.8 %
:RPS:PDB   329->547 2cfuA PDBj 3e-20 7.5 %
:RPS:SCOP  271->534 1w3bA  a.118.8.1 * 1e-16 15.6 %
:HMM:SCOP  30->338 2c2lA1 a.118.8.1 * 1.9e-06 15.1 %
:HMM:SCOP  366->540 2c2lA1 a.118.8.1 * 4.4e-22 27.6 %
:RPS:PFM   378->510 PF04733 * Coatomer_E 1e-05 34.3 %
:HMM:PFM   407->440 PF07719 * TPR_2 4.3e-08 41.2 34/34  
:HMM:PFM   482->509 PF07719 * TPR_2 5e-07 39.3 28/34  
:BLT:SWISS 240->386 RBP1_PLAF7 2e-05 30.1 %
:BLT:SWISS 409->551 Y4667_PSEAE 7e-20 33.1 %
:PROS 447->462|PS00024|HEMOPEXIN
:TM
:REPEAT 3|40->109|176->237|240->301
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ20930.1 GT:GENE AAZ20930.1 GT:PRODUCT tetratricopeptide repeat (tpr) family protein GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(117106..118791) GB:FROM 117106 GB:TO 118791 GB:DIRECTION - GB:PRODUCT tetratricopeptide repeat (tpr) family protein GB:PROTEIN_ID AAZ20930.1 GB:DB_XREF GI:71061927 LENGTH 561 SQ:AASEQ MLVKFFKFFLILILYQSPLYSKNTSLNDFNARYLSNYFSGIVAYENLDNTEALKFFNSSKILIKQHDAYLERYVFSLVHDGKVEKAINQVKQNSTKNNSDFFQANLLLAVDSLKKKNFKKSKVYIDRSYEFINNDRLSLIIAETFKQYLSVFEEKKLIKQKNTFGNFSFINEVFQRCYLNDKDTERYFNTLINSQNDADYSRYVFFLISYLIKKDNYDKAKKVTNNFDYLNSSVLISQGKKWIEDKNLDNFQEIFSCTNSNDIVSELFFLIANLYSSQNDYEKSNFYLNIANYLNPKFIFNLSLLAENYYLSDDYSNTLKTLEAFDKKHEFYYWFKLKKESQIILKKNNKEASLKFINEKFKEIKNPNKKIIFDIANMHKNAKKYIEAINFYDQILLKMNANSDLYAEILYRRGGSYERSGDYVKADKDLLKSLEANPDDAYVLNYLAYSWLEREHKIDTALKMLEKAYEARSNDPYIIDSIGWAYYLVDEYEKAENFLKRAVELMPQDPVVNDHYGDILWQLDRKIQARYFWQAVLNLDETEDAMKKTIKNKLLEGLKNS GT:EXON 1|1-561:0| BL:SWS:NREP 2 BL:SWS:REP 240->386|RBP1_PLAF7|2e-05|30.1|136/2971| BL:SWS:REP 409->551|Y4667_PSEAE|7e-20|33.1|142/590| PROS 447->462|PS00024|HEMOPEXIN|PDOC00023| TM:NTM 1 TM:REGION 1->20| NREPEAT 1 REPEAT 3|40->109|176->237|240->301| SEG 2->14|lvkffkfflilil| SEG 114->122|kkknfkksk| BL:PDB:NREP 1 BL:PDB:REP 373->508|2fo7A|4e-10|29.8|131/136| RP:PDB:NREP 1 RP:PDB:REP 329->547|2cfuA|3e-20|7.5|214/627| RP:PFM:NREP 1 RP:PFM:REP 378->510|PF04733|1e-05|34.3|108/285|Coatomer_E| HM:PFM:NREP 2 HM:PFM:REP 407->440|PF07719|4.3e-08|41.2|34/34|TPR_2| HM:PFM:REP 482->509|PF07719|5e-07|39.3|28/34|TPR_2| GO:PFM:NREP 4 GO:PFM GO:0005198|"GO:structural molecule activity"|PF04733|IPR006822| GO:PFM GO:0005515|"GO:protein binding"|PF04733|IPR006822| GO:PFM GO:0006890|"GO:retrograde vesicle-mediated transport, Golgi to ER"|PF04733|IPR006822| GO:PFM GO:0030126|"GO:COPI vesicle coat"|PF04733|IPR006822| RP:SCP:NREP 1 RP:SCP:REP 271->534|1w3bA|1e-16|15.6|257/388|a.118.8.1| HM:SCP:REP 30->338|2c2lA1|1.9e-06|15.1|179/0|a.118.8.1|1/2|TPR-like| HM:SCP:REP 366->540|2c2lA1|4.4e-22|27.6|170/0|a.118.8.1|2/2|TPR-like| OP:NHOMO 303 OP:NHOMOORG 286 OP:PATTERN ---------------------------------1----11---------------------------- 111--------------------------------------------------------------------------------1-111----1------------111----------------------1---11----------------1-------------------------------------1------------------------------------------------------------------------------------------------------------------------------------------------1-------111-------------------------3--1-111111111111111111111111111111111-11111111111-111111111111112211111111111111111111--11111-----------------------------1--1111111111111111111111111111111111111111111111111111111111111-111111211111115211111111111212111211----1-11-------------------------11----11----1----------------------1111--------------------------------------------------------------------------------------------1---------11111-------------------------1111111111111111111---------1--------------11111111111111--13111111------------------------------------------------- -----1-------11---------------------------------1-1-----------1--------------------------121-1-111111-1-------------------------------------------------------------------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 431 STR:RPRED 76.8 SQ:SECSTR ###############################################################################################################################HHHHHccccccTTcccGGGTTHHHHHcccccccTTccccEEccccccEccccTTHHHHTTccccccEEcccccEEcccccccccccccccccccccccccHHHHTTTccccccccccTTTTTTHHHHHHcHHHHHHHHccHHHHHHHHHHTTcHHHHHHHHHHHHHHcTTcHHHHHHHHHHHHHTTcHHHHHHHHHHGGGcHHTTTccTTTGGGTccccHHHHTcGGGccccccHHHHHHHHHHHHHccccccGGGTccccHHHHHHHHHHHTTcHHHHHHHHHHHHHHHHHTTcHHHHHHHHHHHHHHcTTcHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccHHHHHHccHHHHHHHHHHHccHHHHTTccEEEEEEETTTTEEEEEEEETTEEEEEETcccTTEEEEEEEcccc### DISOP:02AL 560-561| PSIPRED cHHHHHHHHHHHHHHccHHHHHHHccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccc //