[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ20931.1
DDBJ      :             probable DNA-directed DNA polymerase
Swiss-Prot:             

Homologs  Archaea  44/68 : Bacteria  382/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
c.18.1
:243 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   59->236 1ui0A PDBj 3e-24 34.5 %
:RPS:PDB   69->240 2d07A PDBj 2e-28 12.9 %
:RPS:SCOP  56->236 1l9gA  c.18.1.2 * 2e-34 30.9 %
:HMM:SCOP  49->239 1l9gA_ c.18.1.2 * 1.5e-46 33.5 %
:RPS:PFM   83->198 PF03167 * UDG 2e-06 25.2 %
:HMM:PFM   81->230 PF03167 * UDG 2.3e-34 32.6 144/150  
:BLT:SWISS 1->66 UVRB_PROMP 4e-04 35.0 %
:BLT:SWISS 71->197 DPOL_BPSP1 2e-06 34.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ20931.1 GT:GENE AAZ20931.1 GT:PRODUCT probable DNA-directed DNA polymerase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 118803..119534 GB:FROM 118803 GB:TO 119534 GB:DIRECTION + GB:PRODUCT probable DNA-directed DNA polymerase GB:NOTE bacteriophage-type GB:PROTEIN_ID AAZ20931.1 GB:DB_XREF GI:71061928 LENGTH 243 SQ:AASEQ MSKKVINQKTNFDSEFLNSTGSDFIFDEKPINRLKNTSNDLKKDLSIQKIDKVKELANLKEQINSISDCNLKNNSKKIILGDGNINSPIMLIGEAPGVEEDNAGLTFMGEVGDLLKKMLIAINIEKQNIYTTYAVNFRPPEDRKPNSTEIKRYSQFLQKHISIINPKIIILMGSTAMESLTGLNSKISIERGKWKEVIVKNTSYNVIITFNPSYLLRAPENKKHSWDDLKKIKQKILELNLSV GT:EXON 1|1-243:0| BL:SWS:NREP 2 BL:SWS:REP 1->66|UVRB_PROMP|4e-04|35.0|60/100| BL:SWS:REP 71->197|DPOL_BPSP1|2e-06|34.9|126/924| SEG 161->170|isiinpkiii| BL:PDB:NREP 1 BL:PDB:REP 59->236|1ui0A|3e-24|34.5|174/192| RP:PDB:NREP 1 RP:PDB:REP 69->240|2d07A|2e-28|12.9|171/215| RP:PFM:NREP 1 RP:PFM:REP 83->198|PF03167|2e-06|25.2|115/147|UDG| HM:PFM:NREP 1 HM:PFM:REP 81->230|PF03167|2.3e-34|32.6|144/150|UDG| RP:SCP:NREP 1 RP:SCP:REP 56->236|1l9gA|2e-34|30.9|178/191|c.18.1.2| HM:SCP:REP 49->239|1l9gA_|1.5e-46|33.5|188/191|c.18.1.2|1/1|Uracil-DNA glycosylase-like| OP:NHOMO 537 OP:NHOMOORG 427 OP:PATTERN --11111111111111-1111111-11111-1--------------1-1-111-11111112--1111 1221-----------11---------------11111-111---1-----------------1--1--1---------1111111111--------------------1----------------11-111111111111-111111-11---1111111111--111111111111111111-1111111---111111111111111------111------------------------------------1------11------------------------------------------------------------1--2-2222222-2-2-111----12--1---2111111111111111--112122111111212221222121211111111112-22122112321112223323432231111121212211122222222122321211111111111111111111111111111111-1-2111122221221111122132222111222121--11111-------1-11121-111-------112121-1-111----------1-111111212222111--1----------------1-11111---------------------------------2111--------------------------------------------------------------------------------------------------11111------------------------------------------------------------------------1-11111-11------11--1111--------11--------------------------1111111111122 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------6------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 190 STR:RPRED 78.2 SQ:SECSTR ##################################################cccHHHHHHHHHTTTTcGccccccccEEccccccTTccEEEEEccccHHHHHHTcccccccccHHHHHHHHTTcccccccGGGGGGHHHHHcccccHHHHHHHHHHHHHHHHHHcccEEEEEcHHHHHHHHHHHTcccccccccEEEEcTTcccEEEEEccccTTccccGGTHHHHHHHHHHHHHHHTcc### DISOP:02AL 1-9, 42-53| PSIPRED cccccccccccccHHHHccccccccccccHHHHcccccHHHHHHccHHHHHHHccHHHHHHHHHHHHccccccccccEEEccccccccEEEEEccccccHHHcccccccHHHHHHHHHHHHHccccccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHccccEEEEHHHHHHHHHHcccccHHHHccEEEEEEEccccEEEEEEEcHHHHHccHHHHHHHHHHHHHHHHHHHHHcccc //