[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ21008.1
DDBJ      :             drug/metabolite transporter (dmt superfamily)
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  288/915 : Eukaryota  24/199 : Viruses  0/175   --->[See Alignment]
f.39.1
:294 amino acids
:PSIPRED
:DISOPRED
:RPS:SCOP  43->144 1s7bA  f.39.1.1 * 5e-08 13.7 %
:HMM:SCOP  40->146 1s7bA_ f.39.1.1 * 8.8e-10 21.9 %
:HMM:SCOP  180->285 1s7bA_ f.39.1.1 * 1.4e-11 21.9 %
:HMM:PFM   27->137 PF00892 * EamA 6e-11 16.4 110/126  
:HMM:PFM   160->277 PF00892 * EamA 1.5e-12 21.2 118/126  
:BLT:SWISS 8->276 SAM_RICTY 1e-21 26.8 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21008.1 GT:GENE AAZ21008.1 GT:PRODUCT drug/metabolite transporter (dmt superfamily) GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(187198..188082) GB:FROM 187198 GB:TO 188082 GB:DIRECTION - GB:PRODUCT drug/metabolite transporter (dmt superfamily) GB:PROTEIN_ID AAZ21008.1 GB:DB_XREF GI:71062005 LENGTH 294 SQ:AASEQ MLTKNQLGFLYMFLSVCTFSVMDLLVKWSSDYPTGEVLFFRGFFGLLPTYFLIPKGKLKTFYTTERSKEHLFRCLMGLMALIAIVVALRELPLAVVVSLSYAAPLFITVLSIFLLSEKVGIFRWLAVLIGFIGVIIIAEPGFKGMNYLYFLPLIFCIGMAFVTITIRKLSTTEPIWLISIFFTITISIAGLATIPMGWKMPNFQDFILLALIGVTGGSANLFLTQSYKLSEVSLVAPLKYLALVFAIFFGYFIWNEIPTIKTLIGASLVVLASLIIFRREIYHKQKIPSTTRHE GT:EXON 1|1-294:0| BL:SWS:NREP 1 BL:SWS:REP 8->276|SAM_RICTY|1e-21|26.8|265/294| TM:NTM 10 TM:REGION 8->30| TM:REGION 35->55| TM:REGION 71->93| TM:REGION 96->118| TM:REGION 120->142| TM:REGION 145->166| TM:REGION 176->198| TM:REGION 203->225| TM:REGION 229->251| TM:REGION 256->277| SEG 178->188|isifftitisi| HM:PFM:NREP 2 HM:PFM:REP 27->137|PF00892|6e-11|16.4|110/126|EamA| HM:PFM:REP 160->277|PF00892|1.5e-12|21.2|118/126|EamA| RP:SCP:NREP 1 RP:SCP:REP 43->144|1s7bA|5e-08|13.7|102/106|f.39.1.1| HM:SCP:REP 40->146|1s7bA_|8.8e-10|21.9|105/106|f.39.1.1|1/2|Multidrug resistance efflux transporter EmrE| HM:SCP:REP 180->285|1s7bA_|1.4e-11|21.9|105/106|f.39.1.1|2/2|Multidrug resistance efflux transporter EmrE| OP:NHOMO 610 OP:NHOMOORG 314 OP:PATTERN -------------------------------------------------1--1--------------- ---------------------1-----------111------------------------------------------------------------3---------1-----------------------1----1-11--------1-----11--11---1--------111111-11111--------------------------------------------------1--------------1111------------------------------------------------------------------------11----------------2222-2-----1-----------------1----2112-----11322---3233233333332337-1121121137--6887775999762321-6B75676AA922222222---2-142---------11111111111111111-2-21111-34313--------------2------1-11----1--1--1---1111111-12111-11111111-111-----1----------------------------1--11111111111111111--11--11----31-1113333-212221-2121------1-----------1------------------------------------1-------------------------------11111111111--------------121111---------1---11-1-11--31-33331211111111111----------2332111113224422232333331-1---1---------------1--------------------------------------1- ----21-------------------------------------------------------------------------------------------------111----21111-------------------------------------1------221-----------2----1-111-1---------1122- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-2, 281-294| PSIPRED cccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc //