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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ21068.1
DDBJ      :             GcvT-like Aminomethyltransferase protein
Swiss-Prot:             

Homologs  Archaea  29/68 : Bacteria  435/915 : Eukaryota  106/199 : Viruses  0/175   --->[See Alignment]
b.44.2d.250.1
:369 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   37->354 1v5vA PDBj 2e-25 28.4 %
:RPS:SCOP  12->271 1v5vA2  d.250.1.1 * 1e-39 23.2 %
:RPS:SCOP  290->369 1v5vA1  b.44.2.1 * 4e-12 29.5 %
:HMM:SCOP  10->289 1v5vA2 d.250.1.1 * 8.7e-61 28.5 %
:HMM:SCOP  290->369 1v5vA1 b.44.2.1 * 3.5e-11 25.6 %
:RPS:PFM   57->261 PF01571 * GCV_T 2e-22 28.1 %
:HMM:PFM   57->263 PF01571 * GCV_T 6.9e-36 30.0 203/211  
:HMM:PFM   273->365 PF08669 * GCV_T_C 6.4e-20 26.1 92/95  
:BLT:SWISS 37->368 GCST_BACCN 6e-33 28.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21068.1 GT:GENE AAZ21068.1 GT:PRODUCT GcvT-like Aminomethyltransferase protein GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(248657..249766) GB:FROM 248657 GB:TO 249766 GB:DIRECTION - GB:PRODUCT GcvT-like Aminomethyltransferase protein GB:PROTEIN_ID AAZ21068.1 GB:DB_XREF GI:71062065 LENGTH 369 SQ:AASEQ MKNFSIAKSRRLRSTPYTSRIEKQGVTAYTIYNHMLLPAAFGSIEDSYKHLKEHVQIWDVAAERQVEISGKDSAELVQLMTCRDLSKSKIGRCYYCPIIDENGNLVNDPVVLKLDENKWWISIADSDVIFFAKGLASGHKFDVKIVEPVVDIMAIQGPKSFALMEKVFGKKITELKFFGFDYFDFEGTKHLIARSGWSKQGGYEVYVENTQSGQKLYDHLFEVGKEFNVGPGCPNLIERIESALLSYGNDFDNNDNPFECGFDQYVSLDSDINFLGKEKLKEIKLKGPQKKLRGVKIDIKEISLTGSKNIYDENNNVIGELRSACYSPHFQKVIGIAMIKKSHWEASQGFKIQINDNTINGNVCDLPFI GT:EXON 1|1-369:0| BL:SWS:NREP 1 BL:SWS:REP 37->368|GCST_BACCN|6e-33|28.7|328/366| SEG 275->287|lgkeklkeiklkg| BL:PDB:NREP 1 BL:PDB:REP 37->354|1v5vA|2e-25|28.4|310/399| RP:PFM:NREP 1 RP:PFM:REP 57->261|PF01571|2e-22|28.1|203/211|GCV_T| HM:PFM:NREP 2 HM:PFM:REP 57->263|PF01571|6.9e-36|30.0|203/211|GCV_T| HM:PFM:REP 273->365|PF08669|6.4e-20|26.1|92/95|GCV_T_C| GO:PFM:NREP 3 GO:PFM GO:0004047|"GO:aminomethyltransferase activity"|PF01571|IPR006222| GO:PFM GO:0005737|"GO:cytoplasm"|PF01571|IPR006222| GO:PFM GO:0006546|"GO:glycine catabolic process"|PF01571|IPR006222| RP:SCP:NREP 2 RP:SCP:REP 12->271|1v5vA2|1e-39|23.2|259/310|d.250.1.1| RP:SCP:REP 290->369|1v5vA1|4e-12|29.5|78/89|b.44.2.1| HM:SCP:REP 10->289|1v5vA2|8.7e-61|28.5|277/0|d.250.1.1|1/1|Folate-binding domain| HM:SCP:REP 290->369|1v5vA1|3.5e-11|25.6|78/0|b.44.2.1|1/1|Aminomethyltransferase beta-barrel domain| OP:NHOMO 725 OP:NHOMOORG 570 OP:PATTERN 111-11--11111111--------41113-------------------------11111111111--- 121--1-----111-------1--1-------1----1211---112--1--32-11111---11241111-----------51----1111-111---1-211111111--------------11111111111111111---111111111--11111111111111111111111-11-11--1111111111111111111111111111111111111111111111-11111111111111111111-----------------------------------------------------------------------11--1111111-1--111----1---11----11-1-11111111-1--1---111-1-1--21-1---1-1--11111111111---1------A1-32224215445523--112-----45411111111----2--1-----------------------------81---------11111111---11231111-1111-1------23---------1--111-1----11111-11--11-2--111111111-1111111-1-11-11--------------------------------1--41111-111111-111111--11---1---1--------------11--------1---------1--------------11------------------------1--11111111111---111111111111-12---------------------1111-1---1111442321-2331111111111111------111--1-1----11111111-1-111111--------1-1-------------------------1111111111111 -1--11--2---111--11-------1-------------------11--11-1--------11--11-11-111-1-1111-11111-1-1-112------111--1--6122122-1---1221--1141-112-1--1--1-11-1-2-13-1111-1112-2-11121122-111K11111112222111----- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 333 STR:RPRED 90.2 SQ:SECSTR ####################################EEEEcccHHHHHHHHHHccEEEEcTTcEEEEEEcTTHHHHHHHHccccTTcccccEEEEEEEEcTTccEEEEEEEEEEETTEEEEEEEcTTTHHHHHHHHTTcccccEEEEcTTTEEEEEcTTHHHHHHHHHcccGGGccTTcEEEEEETTEEEEEEccccccccEEEEEEEccHHHHHHHHHHHHHHGGGTcEEHHHHHHHHHHHTccccTTTccccccTTTTTcGGGccTTcccTcTTHHHHHHHHHHcccEEEEEEEEcccccccTTcEEEEcETTEEEEEEEEEEEcTTTccEEEEEEEEGGGccccTTcEEEETTEEEEEEEEccccc DISOP:02AL 1-6, 8-10| PSIPRED ccccccccccccccccHHHHHHHcccEEEEEcccEEcccccccHHHHHHHHHHccEEEEccccEEEEEEcHHHHHHHHccccccccccccccEEEEEEEcccccEEEEEEEEEEcccEEEEEEcHHHHHHHHHHHHHcccEEEEEEcHHHEEEEEEcHHHHHHHHHHHcccHHHcccccEEEEEEcccEEEEEEEcccccccEEEEEccHHHHHHHHHHHHHccHHccccHHHHHHHHHHHHHHHHHcccccccccHHHcccHHHcccccccccHHHHHHHHHHHccccEEEEEEEEcccccccccccEEEcccccEEEEEEEccccccccccEEEEEEcHHHHccccEEEEEEcccEEEEEEEccccc //