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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ21084.1
DDBJ      :             amidase
Swiss-Prot:             

Homologs  Archaea  51/68 : Bacteria  753/915 : Eukaryota  176/199 : Viruses  0/175   --->[See Alignment]
c.117.1
:445 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   70->437 1oblA PDBj 2e-34 31.3 %
:RPS:PDB   2->438 2dqnA PDBj 1e-76 26.0 %
:RPS:SCOP  2->438 2df4A1  c.117.1.1 * 4e-77 26.0 %
:HMM:SCOP  1->441 1m22A_ c.117.1.1 * 2.4e-103 32.4 %
:RPS:PFM   63->426 PF01425 * Amidase 1e-40 32.0 %
:HMM:PFM   25->428 PF01425 * Amidase 9.7e-89 31.7 404/435  
:BLT:SWISS 20->438 GATA_ALKMQ 2e-40 35.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21084.1 GT:GENE AAZ21084.1 GT:PRODUCT amidase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(263780..265117) GB:FROM 263780 GB:TO 265117 GB:DIRECTION - GB:PRODUCT amidase GB:NOTE unknown specificity; similar to gatA GB:PROTEIN_ID AAZ21084.1 GB:DB_XREF GI:71062081 LENGTH 445 SQ:AASEQ MLNIFTLTTNKLVEHLKSGQISSVEVCNQYIERIEKFEKDVKAWEYFDKKKLLEKAAEADEYRKSGKPLGSLHGLPIAVKDIIGTFEMPTECGSPVRKKMPSSQDSEVVNLLKIEGAIVMGKTVTTELAYFHPGKTTNPHDNSRTPGGSSSGSAAVIAAHMAPLSIGSQTNGSIIRPASYCGVVGYKPSYGLISRSGVMRQSDKLDHIGVFGKTVEDVALFAKSLIKKDLYDPSTIHYAADEMLTVCKKGPLYEPKFIFYKTKNWKNIDKESQKSFEFFIKTFKKNIEVFDTPSYFDDIPKYHKIIHETDMANNFQGYYKKSKKHLSKEMVSAIERGLKYSAKEYAEAIDFMKRSYESYKEVFEDYHGVLTPSSAGVAPKGLKSTGSPEFCTIWTYMGLPSISLPLLVGENNLPLGIQLIGDKLDDLRFLGVANWLEKNCKKYAK GT:EXON 1|1-445:0| BL:SWS:NREP 1 BL:SWS:REP 20->438|GATA_ALKMQ|2e-40|35.2|412/491| SEG 48->61|dkkkllekaaeade| SEG 147->159|ggsssgsaaviaa| BL:PDB:NREP 1 BL:PDB:REP 70->437|1oblA|2e-34|31.3|351/412| RP:PDB:NREP 1 RP:PDB:REP 2->438|2dqnA|1e-76|26.0|435/485| RP:PFM:NREP 1 RP:PFM:REP 63->426|PF01425|1e-40|32.0|362/425|Amidase| HM:PFM:NREP 1 HM:PFM:REP 25->428|PF01425|9.7e-89|31.7|404/435|Amidase| GO:PFM:NREP 1 GO:PFM GO:0016884|"GO:carbon-nitrogen ligase activity, with glutamine as amido-N-donor"|PF01425|IPR000120| RP:SCP:NREP 1 RP:SCP:REP 2->438|2df4A1|4e-77|26.0|435/485|c.117.1.1| HM:SCP:REP 1->441|1m22A_|2.4e-103|32.4|432/490|c.117.1.1|1/1|Amidase signature (AS) enzymes| OP:NHOMO 2533 OP:NHOMOORG 980 OP:PATTERN 11-1--2333333332--111112111111221111111111111111111111------------11 35B2312222311133344-42117A4444445333498623232121134142312111345114823221111111-111411111--------1------112113111111111-11111111111111111433331111523222232211111211121334531211111211114221111131133333233133333321211133322122122222112511111111111111111111211111111111111111111121111111111111111111111111111111111111111111111211-2111111111112-111---112111111122111112111111111611322411-1111GFG1238458144554542434-6645355A5831833833446343H7142334333334433333333444112-21111111111111111111111111111123371-7CB976467871444466CA55562657948D6141-124422539293431111111111111111113423231121111111111111112122223711111111111111111111111111122---221-13-2--------------1---1--11222------1121--2---1-11----------------------112111-1-----------------1----------11111111111----11111222213426---------------332331211113434317352244215671111111111--------------1122222-------11111111221111111111-----1-1111111---1111111111112112111221 11--221-211---2BBE58BCB8G8B8977888888959679677737DDCKO2565223263312342222343223322232321-984B4332225413222-211G121121----21111-12372-22611-1321521212-21---643324-262222339116-1222H2432699BH8681-1211- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 444 STR:RPRED 99.8 SQ:SECSTR #cTTTTccHHHHHHHHHTTcccHHHHHHHHHHHHHHHHHHHccEEEEcHHHHHHHHHHHHHHHHTTcccccccccEEEEETTcccTTccccTTcGGGTTcccccccHHHHHHHHTTcEEEEEEcccGGGcccccccccTTcTTcccccccHHHHHHHHTTcccEEEEEccccTTHHHHHHHTcEEEEccTTccccTTcccccTTTccEEEEEccHHHHHHHHHHHccccTTcTTccccccccccTTTTccccTTcEEEEEGGGGcTTccHHHHHHHHHHHHHHHHEEEEEccGGGGGHHHHHHHHHccccccccHHHHHHHHHHHccHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEccccccccTTTcTTcHHTTHHHHHHTccEEEEEHEEEETTEEEEEEEEccTTcHHHHHHHHHHHHHcccGGGc DISOP:02AL 443-445| PSIPRED cccHHcccHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccEEEEEcHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccccccccccHHHccccccccHHHHHHHHHcccEEEEcccccHHccccccccccccccccccccccHHHHHHHHHcccEEEEcccccccHHccHHHcccEEEccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccHHHHHcccccccccEEEEEcccccccccHHHHHHHHHHHHHHHccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEccccccccccccccccHHHHHHHHHHcccEEEEEccccccccEEEEEEEcccccHHHHHHHHHHHHHHHccccc //