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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ21096.1
DDBJ      :             probable dehydrogenase
Swiss-Prot:             

Homologs  Archaea  67/68 : Bacteria  786/915 : Eukaryota  188/199 : Viruses  1/175   --->[See Alignment]
c.2.1c.23.12c.91.1
:317 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->307 1gdhA PDBj 2e-65 41.5 %
:RPS:PDB   3->316 3ba1A PDBj 3e-75 31.2 %
:RPS:SCOP  41->317 1aq2A1  c.91.1.1 * 1e-47 14.4 %
:HMM:SCOP  1->137 1gdhA2 c.23.12.1 * 2.5e-34 41.1 %
:HMM:SCOP  102->286 2nacA1 c.2.1.4 * 1.1e-51 37.8 %
:RPS:PFM   34->310 PF00389 * 2-Hacid_dh 2e-38 35.4 %
:HMM:PFM   110->285 PF02826 * 2-Hacid_dh_C 5e-52 39.4 175/178  
:BLT:SWISS 2->307 DHGY_HYPME 7e-65 41.5 %
:PROS 148->175|PS00065|D_2_HYDROXYACID_DH_1

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21096.1 GT:GENE AAZ21096.1 GT:PRODUCT probable dehydrogenase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(277460..278413) GB:FROM 277460 GB:TO 278413 GB:DIRECTION - GB:PRODUCT probable dehydrogenase GB:PROTEIN_ID AAZ21096.1 GB:DB_XREF GI:71062093 LENGTH 317 SQ:AASEQ MKKIIITRRLLKESEEKASKTFDAKLNGNDELYSQSKLIELSEGHDAILTSLTDKMDEETISKLPDSIKVISNFAVGFGNIDLEAAKKRGIAVTNTPEVLSDATAEIGILLILGACRRVPEGVQAAKESSWKWSADYLIGKQLTGTRLGILGMGRIGQKIAKIAKSLGMIIHYHNRSKLSDEKEQGAIYHDSIKSLFGVSDVLSICCPATKETENLINKETLEYFPTGAVITNVARGDIVEDEALIDALNRRKIYAAGLDVYKGEPNLNPGYLKIKSVFILPHLGSATKHTRIAMANLAIDNIDEFFKTGNCKNKVN GT:EXON 1|1-317:0| BL:SWS:NREP 1 BL:SWS:REP 2->307|DHGY_HYPME|7e-65|41.5|306/322| PROS 148->175|PS00065|D_2_HYDROXYACID_DH_1|PDOC00063| BL:PDB:NREP 1 BL:PDB:REP 2->307|1gdhA|2e-65|41.5|306/320| RP:PDB:NREP 1 RP:PDB:REP 3->316|3ba1A|3e-75|31.2|308/312| RP:PFM:NREP 1 RP:PFM:REP 34->310|PF00389|2e-38|35.4|274/300|2-Hacid_dh| HM:PFM:NREP 1 HM:PFM:REP 110->285|PF02826|5e-52|39.4|175/178|2-Hacid_dh_C| GO:PFM:NREP 3 GO:PFM GO:0008152|"GO:metabolic process"|PF00389|IPR006139| GO:PFM GO:0016616|"GO:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor"|PF00389|IPR006139| GO:PFM GO:0051287|"GO:NAD or NADH binding"|PF00389|IPR006139| RP:SCP:NREP 1 RP:SCP:REP 41->317|1aq2A1|1e-47|14.4|263/310|c.91.1.1| HM:SCP:REP 1->137|1gdhA2|2.5e-34|41.1|129/130|c.23.12.1|1/1|Formate/glycerate dehydrogenase catalytic domain-like| HM:SCP:REP 102->286|2nacA1|1.1e-51|37.8|185/0|c.2.1.4|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 4438 OP:NHOMOORG 1042 OP:PATTERN 33211132222222123322311252233361111111222212121112221233333331222-22 2371512233311245511-14114811111434442288241323111121696222--423246758413222333114232233344441333---33424444623-----------------1311--12-333551112323124421122111111232233521111112211222113344222333333333333333343543333324447123333342337777777777777786677325444471215544351426872223331----11-----------1----111111-1211111111136167444444424323553222532114324167111132128842-332146334-1--167CBA3256979544444443446-7857866BD65-CBB5769BA8BEA844144777788462222222245531323-----------------------------2347234865A8BB9B63444488DA666656C6D9DDA-455564475A5A48954212--22112222244312133331--2311222222222234633332324222222222222222222222233222554463333335444435444434545344--12334------54543434445465634-44456554544644444447B8452245555555555555555755433341-555555555555--2211111333222359222334-3323322222322262239344444999576893876111113111334465555554666333333333411111113222222--------11-------1---2------11------3243324222232 ----372-53--35287B997A9CBB85655668785A78989666755CEEHH8BA88767E4634425455465646789989A33-8E67574CABA616556-374BA97AA611134435E1D4AX7-6681432A43641333-52154B58A44735735E58822863864j44548GCKL99966HAHE3 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--- STR:NPRED 317 STR:RPRED 100.0 SQ:SECSTR ccEEEEcccccHHHHHHHHHHcEEEEGGGccccHHHHHHHHTTTEEEEEEcccccccHHHHHHcTTTccEEEEcccccTTccHHHHHHHTcEEEccccTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTGGGGccccccccccTTccEEEEcccHHHHHHHHHHHTTTccEEEEcccccTTcHHHccEEEccHHHHHHTccEEEEcccccGGGTTcccHHHHHHHcTTcEEEEcccGGGccHHHHHHHHHHTcccEEEEcccTTTTcccGGGGGcTTEEEccccTTccHHHHHHHHHHHHHHHHHHHHTcccccccc DISOP:02AL 315-317| PSIPRED ccEEEEEccccHHHHHHHHHHccEEEccccccccHHHHHHHHccccEEEEcccccccHHHHHHcccccEEEEEEccccccccHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEcccEEEEEcccHHHHHHHHHHHHcccEEEEEccccccHHHHcccEEcccHHHHHHHccEEEEEccccHHHHHHccHHHHHHcccccEEEEccccccccHHHHHHHHHcccEEEEEEEccccccccccHHHccccEEEccccccccHHHHHHHHHHHHHHHHHHHcccccccccc //