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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ21119.1
DDBJ      :             DNA photolyase-like protein
Swiss-Prot:             

Homologs  Archaea  6/68 : Bacteria  398/915 : Eukaryota  53/199 : Viruses  0/175   --->[See Alignment]
a.99.1c.52.1
:380 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   3->197 1dnpA PDBj 3e-15 25.4 %
:RPS:PDB   3->200 1dnpA PDBj 1e-32 22.7 %
:RPS:PDB   195->380 1ddqC PDBj 2e-04 4.8 %
:RPS:SCOP  2->189 1np7A1  a.99.1.1 * 2e-33 21.3 %
:RPS:SCOP  254->365 1azoA  c.52.1.14 * 4e-04 22.9 %
:HMM:SCOP  1->214 1np7A1 a.99.1.1 * 1.1e-49 30.6 %
:RPS:PFM   10->197 PF03441 * FAD_binding_7 7e-16 31.5 %
:HMM:PFM   7->197 PF03441 * FAD_binding_7 6.4e-31 28.3 187/277  
:HMM:PFM   201->237 PF02872 * 5_nucleotid_C 0.00025 27.0 37/151  
:BLT:SWISS 2->253 PHR_BUCBP 8e-20 27.8 %
:BLT:SWISS 253->341 UVRB_MYCPU 8e-04 31.5 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21119.1 GT:GENE AAZ21119.1 GT:PRODUCT DNA photolyase-like protein GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 296040..297182 GB:FROM 296040 GB:TO 297182 GB:DIRECTION + GB:PRODUCT DNA photolyase-like protein GB:NOTE possible blue light photoreceptor cryptochrome GB:PROTEIN_ID AAZ21119.1 GB:DB_XREF GI:71062116 LENGTH 380 SQ:AASEQ MIFEASRAKAVDKLNTFVEQNLSDYSKLRNFDFGPSNRSNVSCLSPYITHGIINELEVINKSLKKFSFANNEKFIQEVLWHVYWKGWLELRPDVWSDYLIELDKIKKEFKNNQSYLDATEGKTNVDCFNQWVSELKENNYLHNHTRMWFASIWIFTLELPWQLGAEFFMQHLYDGDAASNTLGWRWVAGIQTQGKHYLASEWNINKFTNNRFKNIKLNENAKPISNDKIYSVISKGFKNSEILEDKTLLIFENNMTFEFSDFKEHKFKKILLVSNKTDRTIKLSEKVLKFKANLLEDQKIRLKEKSINCETINTNDLKNITEEVYALYPTVGENLNFIQNNQLKNIRFLYRKLDQFSWQYCNKGFFNFKNYIPKIIANFN GT:EXON 1|1-380:0| BL:SWS:NREP 2 BL:SWS:REP 2->253|PHR_BUCBP|8e-20|27.8|248/478| BL:SWS:REP 253->341|UVRB_MYCPU|8e-04|31.5|89/657| BL:PDB:NREP 1 BL:PDB:REP 3->197|1dnpA|3e-15|25.4|189/469| RP:PDB:NREP 2 RP:PDB:REP 3->200|1dnpA|1e-32|22.7|194/469| RP:PDB:REP 195->380|1ddqC|2e-04|4.8|186/1112| RP:PFM:NREP 1 RP:PFM:REP 10->197|PF03441|7e-16|31.5|181/252|FAD_binding_7| HM:PFM:NREP 2 HM:PFM:REP 7->197|PF03441|6.4e-31|28.3|187/277|FAD_binding_7| HM:PFM:REP 201->237|PF02872|0.00025|27.0|37/151|5_nucleotid_C| GO:PFM:NREP 2 GO:PFM GO:0003913|"GO:DNA photolyase activity"|PF03441|IPR005101| GO:PFM GO:0006281|"GO:DNA repair"|PF03441|IPR005101| RP:SCP:NREP 2 RP:SCP:REP 2->189|1np7A1|2e-33|21.3|183/279|a.99.1.1| RP:SCP:REP 254->365|1azoA|4e-04|22.9|105/214|c.52.1.14| HM:SCP:REP 1->214|1np7A1|1.1e-49|30.6|209/279|a.99.1.1|1/1|Cryptochrome/photolyase FAD-binding domain| OP:NHOMO 494 OP:NHOMOORG 457 OP:PATTERN ------11-------1--------3---1--------------------------------1------ ---1--1-111----11----1--11-----11111111111--2----12-1111------1-1-1111--------------------------1----1211-1-11--------------1---1-----111-122---11-11-1111122122111112122212--2222-22-2-----1---1-1111111--111111------11------211111111--11111111111111-111-1-------------------11-------1-----------------1111-11111111-------------------------------------------------------------1-1---------112---1---------------1----------1-1-111-1-111----11111-----12111111111211---21--------1--1--11-------------211--11----1111111111111--11111-11----------11------1------12111-----------1-1-------------------------------1-------------------1------11112111112-111111-111111--1-1----111-1-111-1111111111111111-111111111111111111111111--111111111111111111111111111111111111111--11-----1111-1111----------------1111-111111111111111111111111----11--1111-11111112111111111111----------------------------------1---------------1-1---------- ---------------21111111-111------111----------11111111111--111--1-11----1---11-12--------111111----111-1-----1-------------------------------------------------1--------------21------------11----2---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 380 STR:RPRED 100.0 SQ:SECSTR TTccccHHHHHHHHHHHHHTHHHHHHHHTTcTcTTTTcccccccHHHHHHTcccHHHHHHHHHcGGGGGTcHHHHHHHHHHHHHHHHHHHcGGGGGccccGGGGGccccccHHHHHHHHHTccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHTccccHHHHHHHHHTTcTTccHHHHHHHHHHHTTccTTcccTTccccGcEEccccccccccccccccccccccccccTTcccccccccccccccccccccTTTTcccEEEccccTTccccEEEcccccccccEEcccccccHHHHHHHHccccccccccccccccccTTTcTTTTTcccHHHHHHHHHHHccTTcccccccccTTTTTcccccccGGGcccccTT PSIPRED ccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccHHHHccccccccccccccccHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHccHHcHHHccccccccccccccHHHHHHHccHHHccccccccccccccccccccccHHHccHHHHHHHHHHHHcccccccHHHHHHccccEEEEEcccccHHHHHHHHHHccHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHccc //