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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ21124.1
DDBJ      :             deoxyribodipyrimidine photolyase-related protein
Swiss-Prot:             

Homologs  Archaea  8/68 : Bacteria  178/915 : Eukaryota  0/199 : Viruses  1/175   --->[See Alignment]
a.99.1
:496 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   264->367 3fy4C PDBj 9e-08 29.9 %
:RPS:PDB   27->468 3cvwA PDBj 3e-40 12.3 %
:RPS:SCOP  234->468 1np7A1  a.99.1.1 * 3e-40 16.8 %
:HMM:SCOP  226->486 1dnpA1 a.99.1.1 * 1.2e-58 24.7 %
:RPS:PFM   6->223 PF04244 * DPRP 1e-29 32.3 %
:RPS:PFM   236->395 PF03441 * FAD_binding_7 8e-15 28.4 %
:HMM:PFM   4->224 PF04244 * DPRP 2.2e-66 35.7 221/224  
:HMM:PFM   234->396 PF03441 * FAD_binding_7 3.6e-18 26.6 158/277  
:BLT:SWISS 6->190 YR852_MIMIV 1e-08 30.1 %
:BLT:SWISS 250->362 YR853_MIMIV 3e-22 41.4 %
:BLT:SWISS 382->493 YR855_MIMIV 3e-21 46.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21124.1 GT:GENE AAZ21124.1 GT:PRODUCT deoxyribodipyrimidine photolyase-related protein GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(299342..300832) GB:FROM 299342 GB:TO 300832 GB:DIRECTION - GB:PRODUCT deoxyribodipyrimidine photolyase-related protein GB:PROTEIN_ID AAZ21124.1 GB:DB_XREF GI:71062121 LENGTH 496 SQ:AASEQ MKLFFILGNQLFPLKYVDRFKKDHSFYMAEDYELCTYEKHHKQKILLFLSSMRSYADMLRANKYKLEYSKIEDKGFKDTYFKKLKIIINQKKITEISSFEVEDKSFEKKISQFLKKEKINWNIVQTPMFLNSRDEFKNYLVKSKKPFMATFYKEVRKKSGILMGADGNPIGGKWSFDEDNRNKLPKDISIPKFPKINETNHTKKLKPIIEKLFKDHPGSTNDFWLATEYNDVVKLLDFFIKEKSNLFGDYEDAVNQKDNILFHSALSPYINLGLITPEIIIQKILEFHKKHKIRMNSLEGYIRQIIGWREFMRGIYQGYSDEMETKNFFNHERKMKKSWYEGTTGLPPLDHAIKNAVNHGWSHHIERLMILSNIMNLCEVKPTIVYKWFMEMFVDSSDWVMVPNVYGMGLFSDGGIFATKPYICGSSYFMKMMDFKKGEWCNTMDGLYWRFINKNRKFFLKNPRLSMMVYVFDKMKDERKKMILSEADKFIKQNTI GT:EXON 1|1-496:0| BL:SWS:NREP 3 BL:SWS:REP 6->190|YR852_MIMIV|1e-08|30.1|176/196| BL:SWS:REP 250->362|YR853_MIMIV|3e-22|41.4|111/129| BL:SWS:REP 382->493|YR855_MIMIV|3e-21|46.3|108/123| SEG 82->93|kklkiiinqkki| BL:PDB:NREP 1 BL:PDB:REP 264->367|3fy4C|9e-08|29.9|97/520| RP:PDB:NREP 1 RP:PDB:REP 27->468|3cvwA|3e-40|12.3|415/502| RP:PFM:NREP 2 RP:PFM:REP 6->223|PF04244|1e-29|32.3|217/223|DPRP| RP:PFM:REP 236->395|PF03441|8e-15|28.4|155/252|FAD_binding_7| HM:PFM:NREP 2 HM:PFM:REP 4->224|PF04244|2.2e-66|35.7|221/224|DPRP| HM:PFM:REP 234->396|PF03441|3.6e-18|26.6|158/277|FAD_binding_7| GO:PFM:NREP 2 GO:PFM GO:0003913|"GO:DNA photolyase activity"|PF03441|IPR005101| GO:PFM GO:0006281|"GO:DNA repair"|PF03441|IPR005101| RP:SCP:NREP 1 RP:SCP:REP 234->468|1np7A1|3e-40|16.8|226/279|a.99.1.1| HM:SCP:REP 226->486|1dnpA1|1.2e-58|24.7|251/269|a.99.1.1|1/1|Cryptochrome/photolyase FAD-binding domain| OP:NHOMO 189 OP:NHOMOORG 187 OP:PATTERN ------------------------111111-1--1--------------------------------- 1--1-----------------1----------1111-----1--1----11--1--------------11--------------------------------11111-1---------------1-----------11111-----1111--11111111111111---111--1111-11-1-----------11111-----11-11------11-------1------------------------------------------------------------------------------------------------------------------------------------------------------1-11---------11----------------------1----1-----11---------1--1111-111111---------1-----1------------------------------111---1----------1----11---------1-----11---111----------1---11-------------------1--------------------------1--------------------------11-11-1111111111-1-1111-1--1-1------1----------------------------------------------1---------------------------------------------1-----1-11--111--------------------------1----1-1-11-111111111-12111-11--1111111111--11111111--------11----------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------2---- STR:NPRED 458 STR:RPRED 92.3 SQ:SECSTR ##########################EEEEcTTHHHHccccHHHHHHHHHHHHHHHHHHHTTTcccEEEEcccHccHHHHHHHHHHHHTEEEEEEcccccHHHHHHHHHHHHHHHHTTcEEcccccccccccHHHHHHHTTTcccccHHHHHHHHTTccTccccTccccccccccccccccHHHHTccHHcccccHHHHHcTTTTccccHHHHcccGGGcccccccccHHHHHHHHHHHTccHHHHHTccGGGcccccccccccccHHHHHTTcccHHHHHHHHHHHHHTccccccTTccHHHHHHHHHHHHHHHHHHcTTcccccccccccHHHHHHHHTTccccHHHHHHHHHHHHTccccHHHHHHHHHHHTTTTcccHHHHHHHHHHHcccccHHccHHHHHHHHHHHTTcccTcccTTccccTTTHHHHHcccHHHHHTTccccGGGccHHHHHHTTcccTTTcccccccHHHHHHHHH############ DISOP:02AL 496-497| PSIPRED cEEEEEccccccHHHHccccccccEEEEEEEccHHHHccccHHHHHHHHHHHHHHHHHHHHcccEEEEEEcccccccccHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHHHHcccEEEEEEcccEEEcHHHHHHHHccccccccHHHHHHHHHHccccccccccccccccEEEcccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccHHHcccccccccHHHHHHHHccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccHHHccccccccEEEEcccccccccccccHHHHHcccccccccccccccccccHHHHHHHHHHccccccHHHHcccccccHHHHHHHHHHHHHHHHHccc //