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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ21181.1
DDBJ      :             putative porin
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  1/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
f.4.3
:329 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:HMM:SCOP  25->329 3prnA_ f.4.3.1 * 6.9e-23 28.8 %
:BLT:SWISS 146->309 ICEK_PSESX 4e-05 31.4 %
:REPEAT 2|189->233|254->298
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21181.1 GT:GENE AAZ21181.1 GT:PRODUCT putative porin GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 352028..353017 GB:FROM 352028 GB:TO 353017 GB:DIRECTION + GB:PRODUCT putative porin GB:PROTEIN_ID AAZ21181.1 GB:DB_XREF GI:71062178 LENGTH 329 SQ:AASEQ MNNLKKIGLTALAGCLAVTSVHASELTASGSASIGFGGADKGTSANGFYMNDEVTFSGSGELDNGWNVTLSMQVDNNENVGTSTFDNRSVTINMGDAGTFAFGGHGLDSVVGGVDDVMPTAYGETWDIISNTVDNGGVTSTASTLFGAIGSAGSNNMMRYDNTTAVEGLKISASYVPSGTGEVESSVDYGLEYTGYEGLTLGYAMGENNAAGGTSNTDNDTMYVKYAYGPVTVGYQKSEIDATTATDTDEWTAYGVTYAVSDSLSVGYAESTYDAGSSTTDQENSNLSVSYTQGGMTLAAGFAEEKNRGGLTTAVNDVKGYDISLAFAF GT:EXON 1|1-329:0| BL:SWS:NREP 1 BL:SWS:REP 146->309|ICEK_PSESX|4e-05|31.4|140/1148| NREPEAT 1 REPEAT 2|189->233|254->298| SEG 28->39|asgsasigfgga| SEG 103->117|gghgldsvvggvddv| SEG 241->253|dattatdtdewta| HM:SCP:REP 25->329|3prnA_|6.9e-23|28.8|278/0|f.4.3.1|1/1|Porins| OP:NHOMO 1 OP:NHOMOORG 1 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 94 STR:RPRED 28.6 SQ:SECSTR #######################################################################################################################################################################################################cEEEEEETTEEEEEEEcccccccccc###ccccTTTTcccE#############EEEEEEETTEEEEEEEEccEEccEEEEcTTccEEEEccc#cccEEEEEEEccTTccc################### DISOP:02AL 1-4| PSIPRED cccHHHHHHHHHHHHHHHHHHHHccEEEEEEEEEcccccccccccccEEcccEEEEEEcccccccEEEEEEEEEEcccccccccccccEEEEEEcccccEEEEEccccHHcccHHHcccccEEEEEEEEEcccccccccccccHHHHHHHHcccccccccccccccccccccEEEccccccEEEccEEccccccccccEEEEcccccccccccccccccEEEEEEEccccEEEEEEEEEcccccccccccEEEEEEEEEEcccEEEEEEEEEEcccccccccccEEEEEEEEcccEEEEEcccEEEcccccEEEEccccccEEEEEEEc //