[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ21193.1
DDBJ      :             possible transmembrane receptor
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  2/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.93.1
:383 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   29->382 3ckmA PDBj 4e-15 15.4 %
:RPS:SCOP  26->196 1usgA  c.93.1.1 * 2e-14 17.9 %
:HMM:SCOP  26->384 1usgA_ c.93.1.1 * 1.3e-23 20.4 %
:HMM:PFM   26->118 PF04348 * LppC 6e-08 26.1 88/536  
:HMM:PFM   205->231 PF04325 * DUF465 4.5e-05 46.2 26/49  
:BLT:SWISS 28->94 LIVB1_BRUSU 9e-06 35.8 %
:BLT:SWISS 120->285 KIF15_MOUSE 4e-05 26.1 %
:TM
:COIL
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21193.1 GT:GENE AAZ21193.1 GT:PRODUCT possible transmembrane receptor GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(362158..363309) GB:FROM 362158 GB:TO 363309 GB:DIRECTION - GB:PRODUCT possible transmembrane receptor GB:PROTEIN_ID AAZ21193.1 GB:DB_XREF GI:71062190 LENGTH 383 SQ:AASEQ MNKIIKIILFLAFGFSITPVALLANEKIRIGLLVPLTGKNSEIGQSIIKSTRLAINTINNASIEIIPKDTQSNPEVTLKAAKELANSGIKIVIGPVFNESLIYLSELSELTFLALTNKNDNFSKNIINAGINATSQLNAIKKFIELNEIKKTIFLTPDVGFKNEIEKAISNSKIKILENYIYNTDPTKLTKQIEKITRYEIRKQNLEDEINRLEKSEQSNKELLIERLKKRDTLGSVKFDSVVISDFDESLKSVTTSLLYTDITPKEKYFITLNQWFDESLLKETSSQPLYFPSANKDNYDEFSNEYFEKYNQYPNQLSFLSYDLVGLVYYLILQNESVIDKKMFTKKTLFKGKVGVFEIKNNKINHILNFYKAEDGEFKKVF GT:EXON 1|1-383:0| BL:SWS:NREP 2 BL:SWS:REP 28->94|LIVB1_BRUSU|9e-06|35.8|67/371| BL:SWS:REP 120->285|KIF15_MOUSE|4e-05|26.1|165/1387| COIL:NAA 29 COIL:NSEG 1 COIL:REGION 188->216| TM:NTM 1 TM:REGION 2->24| SEG 99->110|esliylselsel| RP:PDB:NREP 1 RP:PDB:REP 29->382|3ckmA|4e-15|15.4|299/309| HM:PFM:NREP 2 HM:PFM:REP 26->118|PF04348|6e-08|26.1|88/536|LppC| HM:PFM:REP 205->231|PF04325|4.5e-05|46.2|26/49|DUF465| RP:SCP:NREP 1 RP:SCP:REP 26->196|1usgA|2e-14|17.9|168/345|c.93.1.1| HM:SCP:REP 26->384|1usgA_|1.3e-23|20.4|314/0|c.93.1.1|1/1|Periplasmic binding protein-like I| OP:NHOMO 2 OP:NHOMOORG 2 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------------------1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 350 STR:RPRED 91.4 SQ:SECSTR ######EEEEEEEcEccE#######cEEcEEEEEccccTTHHHHHHHHHHHHHHHHHHTTccccEEEEETTccHHHHHHHHHHHHHTTccEEEccccHHHHHHHHHcGGGGEEEccccTTcccTTEEEccccHHHHHHHHHHHHHHHTTccccEEEEccHHHHHHHHHHHHTTcccEEEEEEEccHHHHHHHHHHTTHHHHHHHHccccEEEEEccTTHHHHHHHHccTTccEE#######EEcccHHHHHHHHTTTcTTcEEcGGGccHHHHTcHHHHHHTTcEEEEcGGGGccc####cHHHHHHHHHTTTcHHHHHHHHHHHHHHHHTHHHHHH########cTTccEEETTEEEEEcTTccEEEEEEEEEETTEEEEc# DISOP:02AL 1-2| PSIPRED ccHHHHHHHHHHHHHHHHcccccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHccccEEEEEEEccccHHHHHHHHHHHHHccccEEEccccHHHHHHHHHHHcccEEEEEccccccccEEEEEcccHHHHHHHHHHHHHHccccEEEEEEEccHHHHHHHHHHHHcccEEEEEEEEccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEccHHHHHHHHHHHHHccccccccEEEcccccccHHHHHccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccHHHHHccccccEEEEEEEEcccccccEEEEEEEEccEEEccc //