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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ21202.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  1/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.55.1
:128 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   19->72 1okjD PDBj 4e-05 32.0 %
:RPS:PDB   3->96 2a6aB PDBj 6e-05 20.2 %
:RPS:SCOP  4->83 1okjA1  c.55.1.9 * 4e-10 22.5 %
:HMM:SCOP  2->107 1okjA1 c.55.1.9 * 1.8e-13 24.5 %
:RPS:PFM   31->83 PF00814 * Peptidase_M22 4e-08 47.2 %
:HMM:PFM   36->88 PF00814 * Peptidase_M22 8.3e-08 32.1 53/268  
:BLT:SWISS 28->83 Y301_BUCBP 3e-08 44.6 %
:BLT:SWISS 56->126 MNMA_BUCCC 5e-04 43.8 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21202.1 GT:GENE AAZ21202.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 372370..372756 GB:FROM 372370 GB:TO 372756 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:NOTE similar to unknown environmental sequence GB:PROTEIN_ID AAZ21202.1 GB:DB_XREF GI:71062199 LENGTH 128 SQ:AASEQ MKNLIVDATRDKIFLTLIVSENIYTCTHENSKINFEKLMILINDFLKVNSSTLDQINIIYVNRGPGSFAGIRNSLATIKALFLTKKINYYCFSFEDFKGFKEVKYEEVPSLCEKFKIKKNLINPIYLS GT:EXON 1|1-128:0| BL:SWS:NREP 2 BL:SWS:REP 28->83|Y301_BUCBP|3e-08|44.6|56/221| BL:SWS:REP 56->126|MNMA_BUCCC|5e-04|43.8|64/373| BL:PDB:NREP 1 BL:PDB:REP 19->72|1okjD|4e-05|32.0|50/220| RP:PDB:NREP 1 RP:PDB:REP 3->96|2a6aB|6e-05|20.2|94/186| RP:PFM:NREP 1 RP:PFM:REP 31->83|PF00814|4e-08|47.2|53/260|Peptidase_M22| HM:PFM:NREP 1 HM:PFM:REP 36->88|PF00814|8.3e-08|32.1|53/268|Peptidase_M22| GO:PFM:NREP 2 GO:PFM GO:0004222|"GO:metalloendopeptidase activity"|PF00814|IPR000905| GO:PFM GO:0006508|"GO:proteolysis"|PF00814|IPR000905| RP:SCP:NREP 1 RP:SCP:REP 4->83|1okjA1|4e-10|22.5|80/106|c.55.1.9| HM:SCP:REP 2->107|1okjA1|1.8e-13|24.5|106/0|c.55.1.9|1/1|Actin-like ATPase domain| OP:NHOMO 1 OP:NHOMOORG 1 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 96 STR:RPRED 75.0 SQ:SECSTR cEEEEEEEccccEEEEEEETTEEEEEEEcccGGGGGGHHHHHHHHHHHHTccGGGccEEEEEEEcccHHHHHHHHHHHHHHTTccEEEEEHHHHHH################################ PSIPRED cEEEEEEcccHHHEEEEEEccEEEEEEEEcccccHHHHHHHHHHHHHHccccHHHccEEEEEcccccHHHHHHHHHHHHHHHHHHcccEEEEEHHHHHHHHHHcccccHHHccHHHHHHHcccEEEEc //