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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ21257.1
DDBJ      :             nucleoside-diphosphate-sugar epimerases
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  163/915 : Eukaryota  14/199 : Viruses  0/175   --->[See Alignment]
c.2.1d.157.1
:291 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   87->282 3gpiA PDBj 2e-04 23.0 %
:RPS:PDB   108->224 3dbhC PDBj 1e-04 9.4 %
:RPS:SCOP  45->116 1vmeA2  d.157.1.3 * 6e-04 28.1 %
:RPS:SCOP  100->217 1vl0A  c.2.1.2 * 2e-11 18.9 %
:HMM:SCOP  1->286 1e6uA_ c.2.1.2 * 3.9e-17 21.3 %
:RPS:PFM   89->212 PF01370 * Epimerase 4e-09 26.6 %
:HMM:PFM   95->214 PF01370 * Epimerase 3.9e-07 22.5 120/238  
:HMM:PFM   9->86 PF03807 * F420_oxidored 0.0004 16.9 71/96  
:BLT:SWISS 102->214 YEEZ_ECOLI 3e-06 31.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21257.1 GT:GENE AAZ21257.1 GT:PRODUCT nucleoside-diphosphate-sugar epimerases GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 429007..429882 GB:FROM 429007 GB:TO 429882 GB:DIRECTION + GB:PRODUCT nucleoside-diphosphate-sugar epimerases GB:PROTEIN_ID AAZ21257.1 GB:DB_XREF GI:71062254 LENGTH 291 SQ:AASEQ MKDINIFCFGFGQVAKNFIKKLSVEQYNINLSATSRSESSKKSFNGINYNSYLFNSENFDQSLVVKLKEADHILVSIPPENQEDLVIKNFSKFIESSKTKWITYLSATSIYGDHKGEWVNENSKTNPISNNGIARLKAENAWFSLEKNKKVPIQIFRLSGIYSNEKNILMRLKSGGVKVINKKNHFFSRIHVDDISNILFKSLSKFKSGEIYNLSDDKPSTSEEVTLFGAKILNIENIEKIEVDQIKGEMLKNFYNESKKVSNKKMKSYFNYNLKFPSYIEGLNHISCNFI GT:EXON 1|1-291:0| BL:SWS:NREP 1 BL:SWS:REP 102->214|YEEZ_ECOLI|3e-06|31.1|106/274| SEG 32->43|satsrsesskks| SEG 231->242|kilnieniekie| BL:PDB:NREP 1 BL:PDB:REP 87->282|3gpiA|2e-04|23.0|178/273| RP:PDB:NREP 1 RP:PDB:REP 108->224|3dbhC|1e-04|9.4|117/520| RP:PFM:NREP 1 RP:PFM:REP 89->212|PF01370|4e-09|26.6|124/232|Epimerase| HM:PFM:NREP 2 HM:PFM:REP 95->214|PF01370|3.9e-07|22.5|120/238|Epimerase| HM:PFM:REP 9->86|PF03807|0.0004|16.9|71/96|F420_oxidored| GO:PFM:NREP 3 GO:PFM GO:0003824|"GO:catalytic activity"|PF01370|IPR001509| GO:PFM GO:0044237|"GO:cellular metabolic process"|PF01370|IPR001509| GO:PFM GO:0050662|"GO:coenzyme binding"|PF01370|IPR001509| RP:SCP:NREP 2 RP:SCP:REP 45->116|1vmeA2|6e-04|28.1|57/250|d.157.1.3| RP:SCP:REP 100->217|1vl0A|2e-11|18.9|111/281|c.2.1.2| HM:SCP:REP 1->286|1e6uA_|3.9e-17|21.3|258/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 179 OP:NHOMOORG 177 OP:PATTERN -------------------------------------------------------------------- ----------------------------------------------------------------------------------------------------------------------------------------111-------1--1-----11111111--1-1---111111111111------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11111-----11111---1----11111111111-1111111111111111111111111111-1111111111--------1---111111-11111-----------------111111111------1----1-111111111111111-1----11------11--1---11------1-------1111-1---------------1111111-1----1-------------------------------------1-------------------------1--1---------------------------------------------------------------------------------------------------1111--1--------------------------1--------1------11-------------------------11--------------------------------------------------------------------1-- -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--1-1---1111--1-111-212-- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 185 STR:RPRED 63.6 SQ:SECSTR ######################################################################################HHHHHHHTTTccccEEEEEEEEEcccEEEccccccccccccccccHHHHHHHHHccccccTTccHHHHHHHHHHHHHHHTTccccHHHHHHHHTTcccTTccHHHHHHHHHHHHHTccccccHHHHHHHTcHHHHcccHHHHHH#HHTTccccccccccccc#########ccEEccHHHHH#TTcccccccHHHH######### PSIPRED ccccEEEEEcccHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHcccccEEEEEcccccHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHccccEEEEEEccEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccEEEEccccccccccHHHHHHHcccccEEcccccEEEEEEHHHHHHHHHHHHHccccccEEEEcccccccHHHHHHHHHHHHcccccccccHHHHccccHHccccccccccHHHHHHHHccccccccHHHHHHHHHHHHc //