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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ21346.1
DDBJ      :             NAD dependent epimerase/dehydratase family
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  5/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:284 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->143 1udcA PDBj 1e-08 28.7 %
:RPS:PDB   2->165 1db3A PDBj 1e-10 17.5 %
:RPS:SCOP  2->159 1vl0A  c.2.1.2 * 9e-18 25.0 %
:HMM:SCOP  1->245 1db3A_ c.2.1.2 * 1.6e-36 25.0 %
:RPS:PFM   3->161 PF01370 * Epimerase 4e-10 25.8 %
:HMM:PFM   3->194 PF01370 * Epimerase 4.4e-24 23.4 192/238  
:BLT:SWISS 1->159 YTCB_BACSU 2e-08 30.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21346.1 GT:GENE AAZ21346.1 GT:PRODUCT NAD dependent epimerase/dehydratase family GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 517419..518273 GB:FROM 517419 GB:TO 518273 GB:DIRECTION + GB:PRODUCT NAD dependent epimerase/dehydratase family GB:PROTEIN_ID AAZ21346.1 GB:DB_XREF GI:71062343 LENGTH 284 SQ:AASEQ MKILLTGASSYIGQYIILNLLQNNHKILSTSRSDPKIKNKNHKWISHDLSKKPLKLKDFKPDVIIHLAGSAWLNMSSENYVNSNILTTNNLVKTLEGKKFKKVFYLSSRDIYGEVKKSVLNENTIINDPSIYGYTKLIAEKILLNSFPTIILRLPAIIGLGTHGWINSVTNKIKKNKKIILSNSKFNNFMHASELPKIIMKLSKSKINSDIFLVSCSNILKSYNVVKLLKLKLKSKSKIEIKKNKDLNYIISSVKLNRIYKTISVEKVINIYSNELRSKEKYTN GT:EXON 1|1-284:0| BL:SWS:NREP 1 BL:SWS:REP 1->159|YTCB_BACSU|2e-08|30.4|158/316| SEG 48->62|dlskkplklkdfkpd| SEG 166->188|insvtnkikknkkiilsnskfnn| SEG 220->245|lksynvvkllklklkskskieikknk| BL:PDB:NREP 1 BL:PDB:REP 1->143|1udcA|1e-08|28.7|143/338| RP:PDB:NREP 1 RP:PDB:REP 2->165|1db3A|1e-10|17.5|160/335| RP:PFM:NREP 1 RP:PFM:REP 3->161|PF01370|4e-10|25.8|159/232|Epimerase| HM:PFM:NREP 1 HM:PFM:REP 3->194|PF01370|4.4e-24|23.4|192/238|Epimerase| GO:PFM:NREP 3 GO:PFM GO:0003824|"GO:catalytic activity"|PF01370|IPR001509| GO:PFM GO:0044237|"GO:cellular metabolic process"|PF01370|IPR001509| GO:PFM GO:0050662|"GO:coenzyme binding"|PF01370|IPR001509| RP:SCP:NREP 1 RP:SCP:REP 2->159|1vl0A|9e-18|25.0|148/281|c.2.1.2| HM:SCP:REP 1->245|1db3A_|1.6e-36|25.0|244/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 6 OP:NHOMOORG 6 OP:PATTERN -----------------1-------------------------------------------------- -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------1-----------------1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 165 STR:RPRED 58.1 SQ:SECSTR EEEEEETTTcHHHHHHHHHHHHTTcEEEEEccccEEEcccccccHHHEEEEHHHHHHHHcccEEEEcccccTTTTTTccHHHHHTHHHHHHHHHHHcTTTcEEEEEEEGGGGTTcccccccTTcccccccHHHHHHHHHHHHHHHcccEEEEEEccEEcTTccTT####################################################################################################################### DISOP:02AL 284-285| PSIPRED cEEEEEccccHHHHHHHHHHHHcccEEEEEEccccccccccEEEEEcccccHHHHHHHHcccEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHcccEEEEEccccccccccccHHHHHHHHHccccEEEccccEEccEEHHHHHHHHHHHHHccccccEEEEcccccEEHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHcc //