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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ21347.1
DDBJ      :             NAD dependent epimerase/dehydratase family
Swiss-Prot:             

Homologs  Archaea  12/68 : Bacteria  48/915 : Eukaryota  10/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:287 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->230 2ggsA PDBj 2e-14 27.5 %
:RPS:PDB   1->220 1arzA PDBj 7e-09 10.0 %
:RPS:SCOP  2->237 1vl0A  c.2.1.2 * 2e-26 23.9 %
:HMM:SCOP  1->274 1n2sA_ c.2.1.2 * 7.8e-29 23.2 %
:RPS:PFM   2->228 PF04321 * RmlD_sub_bind 1e-13 27.8 %
:HMM:PFM   1->237 PF04321 * RmlD_sub_bind 3.5e-32 24.8 226/287  
:BLT:SWISS 2->225 MAT2B_MOUSE 2e-09 24.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21347.1 GT:GENE AAZ21347.1 GT:PRODUCT NAD dependent epimerase/dehydratase family GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(518270..519133) GB:FROM 518270 GB:TO 519133 GB:DIRECTION - GB:PRODUCT NAD dependent epimerase/dehydratase family GB:PROTEIN_ID AAZ21347.1 GB:DB_XREF GI:71062344 LENGTH 287 SQ:AASEQ MKVYIIGASGLIGKNLFLTLTKKYKTIGTYNSNRTNKKFVKFNMKKDKITKISKEIKENDIFIILSAYSNPGWISQNKREANDLNVLTTKKLIDQIIKLKCKIIFMSSVEVFDGKKKYFLETDKPKPLNFYGKAKYKIEKYIQKKTKNYLILRTSWNSDEVLHGRCVIELTYNSIKKDNAKMAKDNLFSITNVKDTCSIIEKHLMSKSKILHIANKEKISRSILAKRIKKYSKNKLNFKIVKYLKINYLEPRSKINLLKSNDKVIRKFNFKKINSLIERKTKLLDAV GT:EXON 1|1-287:0| BL:SWS:NREP 1 BL:SWS:REP 2->225|MAT2B_MOUSE|2e-09|24.3|218/334| SEG 36->48|nkkfvkfnmkkdk| BL:PDB:NREP 1 BL:PDB:REP 1->230|2ggsA|2e-14|27.5|222/273| RP:PDB:NREP 1 RP:PDB:REP 1->220|1arzA|7e-09|10.0|220/270| RP:PFM:NREP 1 RP:PFM:REP 2->228|PF04321|1e-13|27.8|216/282|RmlD_sub_bind| HM:PFM:NREP 1 HM:PFM:REP 1->237|PF04321|3.5e-32|24.8|226/287|RmlD_sub_bind| GO:PFM:NREP 2 GO:PFM GO:0008831|"GO:dTDP-4-dehydrorhamnose reductase activity"|PF04321|IPR005913| GO:PFM GO:0045226|"GO:extracellular polysaccharide biosynthetic process"|PF04321|IPR005913| RP:SCP:NREP 1 RP:SCP:REP 2->237|1vl0A|2e-26|23.9|222/281|c.2.1.2| HM:SCP:REP 1->274|1n2sA_|7.8e-29|23.2|267/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 75 OP:NHOMOORG 70 OP:PATTERN --------112111-1----------------1-1-----------1--1--1--------------- --------------------------------------------------------------------------------------11--1-----------11------------------------------1------------1-11-1---------------1-------------------11----11111111-111111-1----111----1-----------------------------------2-------1111-----------------------------------------------------1----------1--2------------1-------1--------1---1--------------------------------------------------------------------------------------------------------------------------2--------------------------------------------------------------------------------1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------------------------------------------------------------------------------1---------------------------------------------------------------------------- ----1---------1----------------------------------------------------------------------------------------11-----1--------------------------------------------111-------1-------------------1------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 274 STR:RPRED 95.5 SQ:SECSTR cEEEETTTTcHHHHHHHHHHHcTTcEEEEEcccTTcTTTTccGGGGcccccccccccccHHHEccccHHHHHHHHHHHHHHTccEEcccccccHHHHHHHHHHHHHHHHHHTTTcEEEEEEEcTTccccccHHHHHHHHHTTccHHHHEEccccccccccEcTTccEEEEEEEEccccEEEEEEEEccTHHHHHHHHHHHHHHTTcccccccHHHHHTcTHHHHHHHHHHTTTEEEEEEccGGGcEEEEEEEcccccTTccTTcEEEEEcGGGT############# DISOP:02AL 287-288| PSIPRED cEEEEEccccHHHHHHHHHHHHcccEEEEEccccccccEEEEEccHHHHHHHHHHHccccEEEEccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccEEEEEccHHHccccccccccccccccccHHHHHHHHHHHHHHHHcccEEEEEccccccccccccHHHHHHHHHHcccccEEEEcccccEEEHHHHHHHHHHHHcccccEEEEcccccEEHHHHHHHHHHHHcccccEEEccHHHccccccccccHHHcccHHHHHHcccHHHHHHHHHHcHHHHcc //