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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ21355.1
DDBJ      :             aminotransferase
Swiss-Prot:             

Homologs  Archaea  14/68 : Bacteria  100/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
c.67.1
:449 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   63->219 2c81A PDBj 8e-14 26.3 %
:RPS:PDB   48->337 2c7tA PDBj 1e-13 16.9 %
:RPS:SCOP  54->218 1o61A  c.67.1.4 * 8e-25 25.0 %
:HMM:SCOP  42->449 1b9hA_ c.67.1.4 * 1.8e-46 25.9 %
:RPS:PFM   61->218 PF01041 * DegT_DnrJ_EryC1 1e-10 24.8 %
:HMM:PFM   57->218 PF01041 * DegT_DnrJ_EryC1 4.9e-35 28.6 161/363  
:HMM:PFM   307->439 PF01041 * DegT_DnrJ_EryC1 0.0001 12.1 132/363  
:BLT:SWISS 46->218 Y1066_METJA 2e-14 27.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21355.1 GT:GENE AAZ21355.1 GT:PRODUCT aminotransferase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 526790..528139 GB:FROM 526790 GB:TO 528139 GB:DIRECTION + GB:PRODUCT aminotransferase GB:PROTEIN_ID AAZ21355.1 GB:DB_XREF GI:71062352 LENGTH 449 SQ:AASEQ MFNNFIIIKSLYNMKYPRHKVFIPLMTLFMTFFRMLFGDIKKESAQTEKLISIIKSYWVRKNCILMSTWRIGLYYTLKHLNLDKDDEIIITPLCIADTVNCIKLNNLSPILVDLDINTHCISITDLKKKISKKTKVIHITYLSGMVPDLEEILKICKEKNIKLIEDISQNYGARDTNNKLLGSQGHISVGSFSFGKCFASIGGGFLITDDNQLFKKIKKDYYLNIKKVNRFFLIRHCFFQLLAAIATSKYIFNFFTYYIFVLLIKTNKKIYDNFHKPKFRINSMSDYMLNSPVIREEWPNTIFWIFSDIHATPAIKTYRLLDKGIEKRRYLARILIENISEKVKSNIPTGSLDYNKSVYFHLVIYNNINNNKNDIYKFHRYLLANKIDAVGYGLYLINNDSSLGLSEFKTPNAKYIKDNSIFIPMHESYEKNDMIYMAKILNKYFDDQK GT:EXON 1|1-449:0| BL:SWS:NREP 1 BL:SWS:REP 46->218|Y1066_METJA|2e-14|27.9|172/386| SEG 25->37|lmtlfmtffrmlf| SEG 121->140|isitdlkkkiskktkvihit| SEG 364->377|iynninnnkndiyk| BL:PDB:NREP 1 BL:PDB:REP 63->219|2c81A|8e-14|26.3|156/408| RP:PDB:NREP 1 RP:PDB:REP 48->337|2c7tA|1e-13|16.9|278/411| RP:PFM:NREP 1 RP:PFM:REP 61->218|PF01041|1e-10|24.8|157/358|DegT_DnrJ_EryC1| HM:PFM:NREP 2 HM:PFM:REP 57->218|PF01041|4.9e-35|28.6|161/363|DegT_DnrJ_EryC1| HM:PFM:REP 307->439|PF01041|0.0001|12.1|132/363|DegT_DnrJ_EryC1| RP:SCP:NREP 1 RP:SCP:REP 54->218|1o61A|8e-25|25.0|164/374|c.67.1.4| HM:SCP:REP 42->449|1b9hA_|1.8e-46|25.9|328/0|c.67.1.4|1/1|PLP-dependent transferases| OP:NHOMO 129 OP:NHOMOORG 115 OP:PATTERN --------1--------1--------------111-1--1--1-----12-1--1--1--1------- -1----------------------------------------1------------------1---------------------1--212----1-------11111-1-2---------------------------11--------11---1-----------1--111-1-------2---------1----------1------1-----1---1------------------------------------------------------------------------------------------------------------1----111-------------12---------211--1----------1------------------------------------------------------------1----------------------------------------------------------1-------------------------------------11--1---------1-----------11111-1----------1--------------311--------1-11-11111211-1-------1--1----1-------1-------------------1---------------------11--------1---------1-------------22-----------------1----------------------------------------------------------------1-------------------11111111---------------------------------112211--------1------------------------------11-------- ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 309 STR:RPRED 68.8 SQ:SECSTR ##########################################HcHHHHHHHHHHHHHHTccEEEEEccHHHHHHHHHHHTTccTTcEEEEEccccTHHHHHHHHTTcEEEEEcccTTTccccHHHHHHHccTTEEEEcccccTTccccHHHHHHHHHHHTcEEEEEcTTccTTcEETTEETTccccEEEEEccTTccccccccEEEEEccHHHHHHHHHHHcTTHHHHHcTTEEEcccTTcccTTcccEEEccccccccccccHHHHHHHHTTHHHHHHHHHHHHHHHHHHcccHTTcTTEEEccccTTEEEcEEEEEcGGGTTTccHHHHHHHHHHHHHHHHTccTTTEE################################################################################################## DISOP:02AL 447-449| PSIPRED ccccHHHHccHHHccccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccEEEEEEcHHHHHHHHHHHHccccccEEEEccccHHHHHHHHHHcccEEEEEEcccccccccHHHHHHHcccccEEEEEEccccccccHHHHHHHHHHcccEEEEEccHHccccccccEEEcccccEEEEEEcccccccccccEEEEEccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEccccHHHHHHHHHHccccccHHHHHHHHHHccHHHHHHcccccccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHccccEEEEccccEEEEEEcccccHHHHHcccEEEEHHHHccHHHHHHHHHHHHHHHcccc //