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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ21429.1
DDBJ      :             Sua5/YciO/YrdC family protein
Swiss-Prot:             

Homologs  Archaea  65/68 : Bacteria  753/915 : Eukaryota  147/199 : Viruses  0/175   --->[See Alignment]
d.115.1
:310 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   8->310 2eqaA PDBj 2e-38 35.7 %
:RPS:PDB   12->92 3c9dA PDBj 2e-13 7.4 %
:RPS:PDB   118->190 2e6gH PDBj 3e-15 14.5 %
:RPS:SCOP  8->203 1jcuA  d.115.1.1 * 1e-44 24.6 %
:HMM:SCOP  8->204 1jcuA_ d.115.1.1 * 8.1e-51 37.5 %
:RPS:PFM   21->189 PF01300 * Sua5_yciO_yrdC 1e-28 38.1 %
:RPS:PFM   263->308 PF03481 * SUA5 3e-07 47.8 %
:HMM:PFM   14->189 PF01300 * Sua5_yciO_yrdC 1.1e-54 41.7 175/179  
:HMM:PFM   194->309 PF03481 * SUA5 1.4e-20 28.4 116/152  
:BLT:SWISS 1->308 YWLC_BACSU 8e-42 35.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21429.1 GT:GENE AAZ21429.1 GT:PRODUCT Sua5/YciO/YrdC family protein GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(594493..595425) GB:FROM 594493 GB:TO 595425 GB:DIRECTION - GB:PRODUCT Sua5/YciO/YrdC family protein GB:PROTEIN_ID AAZ21429.1 GB:DB_XREF GI:71062426 LENGTH 310 SQ:AASEQ MKSNQSNIKKAKKYLDKNYCIGVPTETVYGLAANAYKNSAVKKIYNLKKRPKNNPLIVHYHDIDSLKKDCLINDNFIKLYKKFSPGPITYVLQLKKNSKISKYVTNNKKSLAVRFPKHTIFKNLLKQLDYPLAAPSANITTKVSAVKAKDVKEEFGNKIKYILDGGTCAIGIESTIVNLTAKPTILRLGGLDISKIQKALGFKMNISTNPKKKIAPGQSRLHYSPGIPLRMNVTKPKNNEAFILIKKKKTKLKSYFYLTSKSNLDEAAKNLYSCLRKIKNKGYKSIAVEKIPNIGLGKTINDRLRRASKY GT:EXON 1|1-310:0| BL:SWS:NREP 1 BL:SWS:REP 1->308|YWLC_BACSU|8e-42|35.2|307/346| SEG 243->253|ilikkkktklk| BL:PDB:NREP 1 BL:PDB:REP 8->310|2eqaA|2e-38|35.7|294/327| RP:PDB:NREP 2 RP:PDB:REP 12->92|3c9dA|2e-13|7.4|81/208| RP:PDB:REP 118->190|2e6gH|3e-15|14.5|69/229| RP:PFM:NREP 2 RP:PFM:REP 21->189|PF01300|1e-28|38.1|168/178|Sua5_yciO_yrdC| RP:PFM:REP 263->308|PF03481|3e-07|47.8|46/146|SUA5| HM:PFM:NREP 2 HM:PFM:REP 14->189|PF01300|1.1e-54|41.7|175/179|Sua5_yciO_yrdC| HM:PFM:REP 194->309|PF03481|1.4e-20|28.4|116/152|SUA5| RP:SCP:NREP 1 RP:SCP:REP 8->203|1jcuA|1e-44|24.6|191/208|d.115.1.1| HM:SCP:REP 8->204|1jcuA_|8.1e-51|37.5|192/208|d.115.1.1|1/1|YrdC/RibB| OP:NHOMO 1111 OP:NHOMOORG 965 OP:PATTERN 111111111111111111111111-1111111111111111111111111111111111111111--1 222--11111111111111-11111111111111111211-1111-11111-11111-11121111111121---11111---1-111111111--1--11221-11211111111111111111111111111111111111111122111121--------311-1111---------------111111111111111111111111111111111111111111111111222222122222211111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111-211111111111111111111111111111111111-11111111111111111121111111111111111111111111111111111111111111111111111111111-111111111111122222222222111122221111122222112-1221111222122212211-1-1-111111122121111212-1-------111111111111112222-------------------------11111112-21112111111111111111111---11--1-----11112111111111111-111111111111111111111111111111111111111111121111111-1122222222222--2122222222212-1-222122222221221-------111----1-----2---------11111111-1--12222211122----------11111-11222222131111111-11111---------------------1111111111111 111111--211111121111111111111111111111111-11-111111111111--111111111-1111111111111111111-12111111111121111112112-321-1-----------------------------1-----111113122122111111--12-11-1--11-12211-22111111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 302 STR:RPRED 97.4 SQ:SECSTR ####HHHHHHHEEEEcccEEEEccccccccGGGTTTcTTTcccTTcHHHHHHHHHHHTcHccccTTcccTTHHHHHHHHHHTHHHHHHHHHHHHHccTTccHHHHTTccEEEEEcccHHHHHHHTTccEEEEcEEcccccccccEEEEEcccccTTcccEEEEEccHHccccHHHHHHHHHccccEEEEEccHHHHHHHcTcccccccccccEEEEEccGGGHHHHHHHHTT##TccEEEEEEGGGTGGGTTcEEEEEEcTTcHHHHHHHHHHHHHHH#HHccccEEEEcccccTTHHHHH#HHHHHTTc DISOP:02AL 1-3, 308-310| PSIPRED ccccHHHHHHHHHHHHcccEEEEEccccEEEEEccccHHHHHHHHHHHcccccccEEEEEccHHHHHHHHcccHHHHHHHHHHccccEEEEEEccccccccHHHcccccEEEEEccccHHHHHHHHHccccEEEEEcccccccccccHHHHHHHHcccEEEEEEccccccccccEEEEEccccEEEEcccccHHHHHHHccccccccccccccccccccEEEEccccEEEEEEEccccccEEEEEccccccccEEEEEcccccHHHHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHHcc //