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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ21442.1
DDBJ      :             GcvT-like Aminomethyltransferase protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  125/915 : Eukaryota  83/199 : Viruses  0/175   --->[See Alignment]
d.250.1
:295 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   196->241 1vlyA PDBj 2e-04 50.0 %
:RPS:SCOP  9->220 1nrkA2  d.250.1.1 * 4e-39 24.2 %
:HMM:SCOP  6->224 1nrkA2 d.250.1.1 * 3.5e-46 32.2 %
:RPS:PFM   13->113 PF01571 * GCV_T 6e-11 31.7 %
:HMM:PFM   11->105 PF01571 * GCV_T 2.7e-20 28.4 95/211  
:HMM:PFM   208->256 PF08669 * GCV_T_C 0.0004 22.9 48/95  
:BLT:SWISS 9->234 CAF17_NEUCR 8e-23 31.8 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21442.1 GT:GENE AAZ21442.1 GT:PRODUCT GcvT-like Aminomethyltransferase protein GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(609626..610513) GB:FROM 609626 GB:TO 610513 GB:DIRECTION - GB:PRODUCT GcvT-like Aminomethyltransferase protein GB:PROTEIN_ID AAZ21442.1 GB:DB_XREF GI:71062439 LENGTH 295 SQ:AASEQ MNNQNVYILEDRGILYINGADAKEFLQNMISNDINKVSEDSSCFASLLTPQGKFLFAFIIIKHKSGYFIDCEKSQTEALFKQLSVYKLRSKVEIMNLSNEFVVAAFNKEKFLEFEGSKDIAGNTIKYREDSILLDPRNKDLGARLIINLEKLYLSLKKLELKDSPIAEYYKLSHQLGIPQKNMNELQNKLFGIECNFEELNGIDFKKGCYVGQENTARIKLKNKLSKRLLPIYLIEGEINQDDLIYNGDFEIGKVLISNEYPFALIKYLDDNFNQENEFKSKNAKLKIKIPSWIN GT:EXON 1|1-295:0| BL:SWS:NREP 1 BL:SWS:REP 9->234|CAF17_NEUCR|8e-23|31.8|217/439| SEG 149->162|leklylslkklelk| BL:PDB:NREP 1 BL:PDB:REP 196->241|1vlyA|2e-04|50.0|42/314| RP:PFM:NREP 1 RP:PFM:REP 13->113|PF01571|6e-11|31.7|101/211|GCV_T| HM:PFM:NREP 2 HM:PFM:REP 11->105|PF01571|2.7e-20|28.4|95/211|GCV_T| HM:PFM:REP 208->256|PF08669|0.0004|22.9|48/95|GCV_T_C| GO:PFM:NREP 3 GO:PFM GO:0004047|"GO:aminomethyltransferase activity"|PF01571|IPR006222| GO:PFM GO:0005737|"GO:cytoplasm"|PF01571|IPR006222| GO:PFM GO:0006546|"GO:glycine catabolic process"|PF01571|IPR006222| RP:SCP:NREP 1 RP:SCP:REP 9->220|1nrkA2|4e-39|24.2|211/243|d.250.1.1| HM:SCP:REP 6->224|1nrkA2|3.5e-46|32.2|214/243|d.250.1.1|1/1|Folate-binding domain| OP:NHOMO 214 OP:NHOMOORG 208 OP:PATTERN -------------------------------------------------------------------- ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1111111-1111111111111111111111111-11-1111-111-1111111111--11-11-1111111-111111111-11111--11111111--11-1111111111111111111111-----------------------------------------------------111------------1-----------------------------------------------------------11--1---------------1----1----11---1-------------------------------------------------------------------------------------------------------------1-----------------------------------------------------11----------------------------11-------------------------------------------------------- ----111-----11111-1--------------11-1----------1111-1-111--1111-----------------------11-1--1-11------111-----212112-11--11-1--1------11--1--1-11-11---1-1111111--111111-211111--1--1-1111-----2--1-11- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 42 STR:RPRED 14.2 SQ:SECSTR ###################################################################################################################################################################################################TGGGTTcccccccccTTHH#HHHTTcTT#cccEEE##EEEEEcccc###################################################### DISOP:02AL 1-2| PSIPRED ccccEEEEccccEEEEEEcHHHHHHHHccccccccccccccEEEEEEEcccccEEEEEEEEEccccEEEEEccHHHHHHHHHHHHHccccEEEEEEcccEEEEEEEcHHHHHHHHccccccccccccccEEEEEEccccccEEEEEEcHHHHHHHHHHcccccccHHHHHHHHHHccccccccccccccccHHHHcHHHHccccccccccHHHHHHHHHHHHccccEEEEEEEEEccccccccEEEEccEEEEEEEEccccHHHHHHHHHHHcccccEEEEccEEEEEEEccccc //