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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ21446.1
DDBJ      :             bacteriorhodopsin
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  7/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
f.13.1
:255 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   38->247 1jgjA PDBj 1e-11 30.0 %
:RPS:PDB   46->247 1dzeA PDBj 1e-31 26.5 %
:RPS:SCOP  32->247 1xioA  f.13.1.1 * 5e-30 17.8 %
:HMM:SCOP  31->252 1xioA_ f.13.1.1 * 6.2e-64 35.0 %
:RPS:PFM   44->242 PF01036 * Bac_rhodopsin 1e-35 53.4 %
:HMM:PFM   36->247 PF01036 * Bac_rhodopsin 1.9e-15 25.0 208/233  
:BLT:SWISS 28->254 PRRG_PRB01 1e-67 52.7 %
:PROS 99->111|PS00950|BACTERIAL_OPSIN_1
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21446.1 GT:GENE AAZ21446.1 GT:PRODUCT bacteriorhodopsin GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 614302..615069 GB:FROM 614302 GB:TO 615069 GB:DIRECTION + GB:PRODUCT bacteriorhodopsin GB:PROTEIN_ID AAZ21446.1 GB:DB_XREF GI:71062443 LENGTH 255 SQ:AASEQ MKKLKLFALTAVALMGVSGVANAETTLLASDDFVGISFWLVSMALLASTAFFFIERASVPAGWRVSITVAGLVTGIAFIHYMYMRDVWVMTGESPTVYRYIDWLITVPLLMLEFYFVLAAVNKANSGIFWRLMIGTLVMLIGGYLGEAGYINTTLGFVIGMAGWFYILYEVFSGEAGKNAAKSGNKALVTAFGAMRMIVTVGWAIYPLGYVFGYMTGGMDASSLNVIYNAADFLNKIAFGLIIWAAAMSQPGRAK GT:EXON 1|1-255:0| BL:SWS:NREP 1 BL:SWS:REP 28->254|PRRG_PRB01|1e-67|52.7|226/249| PROS 99->111|PS00950|BACTERIAL_OPSIN_1|PDOC00291| TM:NTM 8 TM:REGION 5->27| TM:REGION 38->60| TM:REGION 65->86| TM:REGION 100->122| TM:REGION 125->147| TM:REGION 152->174| TM:REGION 187->209| TM:REGION 231->252| SEG 173->187|sgeagknaaksgnka| BL:PDB:NREP 1 BL:PDB:REP 38->247|1jgjA|1e-11|30.0|200/217| RP:PDB:NREP 1 RP:PDB:REP 46->247|1dzeA|1e-31|26.5|196/225| RP:PFM:NREP 1 RP:PFM:REP 44->242|PF01036|1e-35|53.4|193/204|Bac_rhodopsin| HM:PFM:NREP 1 HM:PFM:REP 36->247|PF01036|1.9e-15|25.0|208/233|Bac_rhodopsin| GO:PFM:NREP 3 GO:PFM GO:0005216|"GO:ion channel activity"|PF01036|IPR001425| GO:PFM GO:0006811|"GO:ion transport"|PF01036|IPR001425| GO:PFM GO:0016020|"GO:membrane"|PF01036|IPR001425| RP:SCP:NREP 1 RP:SCP:REP 32->247|1xioA|5e-30|17.8|208/217|f.13.1.1| HM:SCP:REP 31->252|1xioA_|6.2e-64|35.0|220/0|f.13.1.1|1/1|Family A G protein-coupled receptor-like| OP:NHOMO 8 OP:NHOMOORG 8 OP:PATTERN -------------------------------1------------------------------------ --------------------------------------------1-----------------------------------------------------------------------------------------------1-------------------------1--------------------------------------------------------11-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 214 STR:RPRED 83.9 SQ:SECSTR ####################################HHHHHHHHHHHHHHHHHHHTTcccTTHHHHHHHHHHHHHHHHHHHHHHHccTTEEccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTccHHHHHHHHHHHHHHHHHHHHHHHcccTTTHHHHHHHHHHHHHHHHHHTTHHHHHHTccHHHHHHHHHHHHHHHHHHHHTTHHHHHHHcTTcccccHHHHHHHHHHHHHHHHHHHHHHHHTccHHH##### DISOP:02AL 181-182, 184-185, 252-255| PSIPRED cHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc //