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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ21462.1
DDBJ      :             Trypsin-like serine protease
Swiss-Prot:             

Homologs  Archaea  21/68 : Bacteria  854/915 : Eukaryota  64/199 : Viruses  0/175   --->[See Alignment]
b.47.1
:371 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   165->328 2zleA PDBj 1e-16 37.3 %
:RPS:PDB   165->306 3ee1A PDBj 1e-17 12.9 %
:RPS:SCOP  165->314 1befA  b.47.1.3 * 2e-17 22.0 %
:HMM:SCOP  107->315 1sotA2 b.47.1.1 * 7.4e-37 29.7 %
:RPS:PFM   261->288 PF10459 * Peptidase_S46 2e-04 50.0 %
:HMM:PFM   156->297 PF00089 * Trypsin 2.6e-11 23.6 140/219  
:HMM:PFM   284->346 PF07255 * Benyvirus_14KDa 8.8e-05 29.0 62/123  
:BLT:SWISS 42->128 GRP78_DEBHA 2e-04 31.0 %
:BLT:SWISS 165->346 Y4BJ_RHISN 4e-22 34.8 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21462.1 GT:GENE AAZ21462.1 GT:PRODUCT Trypsin-like serine protease GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(627169..628284) GB:FROM 627169 GB:TO 628284 GB:DIRECTION - GB:PRODUCT Trypsin-like serine protease GB:NOTE trypsin-like serine and cysteine proteases GB:PROTEIN_ID AAZ21462.1 GB:DB_XREF GI:71062459 LENGTH 371 SQ:AASEQ MKKLLGIIVLGLLLSGNAYAKSYYVAYKNYFDMELSKGNTEKVYDGIYSSFKGRKSLEISKKKALDKCKKESKLKNIREDGCLLFKYEISSWIDSFNGTEFVRHPWDNEVDIFEKTLKPEEIIKGVRFSEKPKKKEPKKQKPKPDDNKVVPAGSGSGFFVSSEGHIITNHHVIDGCNTTKVSFKGNQIDAQILAVDKMNDIAILKTNIKPASIFPISNEDVSLLEDVVVAGYPLGKKVSSAIKTHKGVVTALAGAGDNYSNFQTDASINAGNSGGPIMNQKGNIVGIAVASWVQEGVQGVHFGIKSSTLKTFANSNSLKFSQPNNKELTNKDLGKLITEATVYLECHMTVANINKMRAEANNQKAFFSEFK GT:EXON 1|1-371:0| BL:SWS:NREP 2 BL:SWS:REP 42->128|GRP78_DEBHA|2e-04|31.0|87/683| BL:SWS:REP 165->346|Y4BJ_RHISN|4e-22|34.8|181/630| SEG 4->14|llgiivlglll| SEG 130->144|ekpkkkepkkqkpkp| SEG 153->164|gsgsgffvsseg| BL:PDB:NREP 1 BL:PDB:REP 165->328|2zleA|1e-16|37.3|153/396| RP:PDB:NREP 1 RP:PDB:REP 165->306|3ee1A|1e-17|12.9|124/336| RP:PFM:NREP 1 RP:PFM:REP 261->288|PF10459|2e-04|50.0|28/693|Peptidase_S46| HM:PFM:NREP 2 HM:PFM:REP 156->297|PF00089|2.6e-11|23.6|140/219|Trypsin| HM:PFM:REP 284->346|PF07255|8.8e-05|29.0|62/123|Benyvirus_14KDa| RP:SCP:NREP 1 RP:SCP:REP 165->314|1befA|2e-17|22.0|132/177|b.47.1.3| HM:SCP:REP 107->315|1sotA2|7.4e-37|29.7|195/213|b.47.1.1|1/1|Trypsin-like serine proteases| OP:NHOMO 1982 OP:NHOMOORG 939 OP:PATTERN --1----11111111111111------1-1----------------1-----------------1-13 23522-1111111132211-121112111112133311111122--112---1-21--1133212232221-1111111-11212222112111111--111-123112111111111111111111111111131333334433353473342233322423233444342321111311122111122-41322222222222222211333322312211221111112422222222222222212222111111111111111111112221111111111-11111111111111111111111111111111111121131111111111141332111-121111111222111213222221-2224122533333647675436355333333333333-45544543353-43335665553442333312333321322222222222335331111111111111111111111111111122122122221344544333335545333333334433322433423423443422332422111111111123243221111232421121232342222544555331111-11111111111111121-2-222222233212222222222222222222221-1223411-11122332232222222222-2222222222222222223222332222322222222222222322222223133333333333311321111122224331212222222221222222212222222422222222222222333---------12222222222222222222222222222--411111111111111223--------------111---------1111111111331 ------1-----------------------------------------------------------------------------------------------------2--24338-21-21324314-372-22613--33232-3-1-3--6142221-111-----------3-23r232338357-58-321116 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 176 STR:RPRED 47.4 SQ:SECSTR ####################################################################################################################################################################HHHHHHHHHTTcHHHHHHHHTTcTTTTcccHHHHHHHHHHHccHHHHHHHHHcccccccEEEEEEEEccccEEEEEccTTcEEEccEEEccccEEEEEEEEEEEcccccccHHEEccccEEHHHHHEEccGGGcEEEEEEEEHHHTTTcccHHHHHcccccEEcccHHHHHHTccc############################### DISOP:02AL 1-2, 134-152, 322-324| PSIPRED cHHHHHHHHHHHHHcccHHcccccHHHHHEEEEEccccccHHHHcccccccccHHHHHHHHHHHHHHccccccccccccccEEEEccccccEEEccccccccccccccccHHHHHHccccccEEEEEEEEccEEEcccccccccccccEEEEEEEEEEEEccccEEEEcHHHHccccEEEEEEcccEEEEEEEEEcccccEEEEEEccccccEEEEcccccccccEEEEEEEcccccccEEEEEEEEEEEEcccccccccEEEEEEEEccccccccEEcccccEEEEEEEEEcccccccEEEEEcHHHHHHHHHHHHHccccccccEEEcHHHEEEEEcccHHHHHHccEEEEEEEccccHHHHHHHHHcc //