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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ21470.1
DDBJ      :             TPR-like
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  1/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.118.8d.157.1
:145 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   35->110 2cg3A PDBj 1e-08 9.2 %
:RPS:SCOP  27->125 2cfuA2  d.157.1.13 * 2e-07 9.1 %
:HMM:SCOP  27->141 2fbnA1 a.118.8.1 * 8.4e-08 20.9 %
:HMM:PFM   28->57 PF07719 * TPR_2 0.00053 23.3 30/34  
:HMM:PFM   89->137 PF09820 * AAA-ATPase_like 0.00019 20.4 49/284  
:BLT:SWISS 39->102 GLUP_BACSU 5e-05 29.7 %
:TM

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21470.1 GT:GENE AAZ21470.1 GT:PRODUCT TPR-like GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 636586..637023 GB:FROM 636586 GB:TO 637023 GB:DIRECTION + GB:PRODUCT TPR-like GB:PROTEIN_ID AAZ21470.1 GB:DB_XREF GI:71062467 LENGTH 145 SQ:AASEQ MRTINKLIIVLFIILNFGSSSFAENNFFEEGKNKYDEQKYEESKFLFQRSIVFNPKDKDSYLYLAKIYNFEENKREEQKNIDTVLLLDPKNEEANYMLMEIELKRSNYSKVKELADNFSKICNKLCDKKNSILESLKNLEPKNES GT:EXON 1|1-145:0| BL:SWS:NREP 1 BL:SWS:REP 39->102|GLUP_BACSU|5e-05|29.7|64/507| TM:NTM 1 TM:REGION 2->24| RP:PDB:NREP 1 RP:PDB:REP 35->110|2cg3A|1e-08|9.2|76/617| HM:PFM:NREP 2 HM:PFM:REP 28->57|PF07719|0.00053|23.3|30/34|TPR_2| HM:PFM:REP 89->137|PF09820|0.00019|20.4|49/284|AAA-ATPase_like| RP:SCP:NREP 1 RP:SCP:REP 27->125|2cfuA2|2e-07|9.1|99/502|d.157.1.13| HM:SCP:REP 27->141|2fbnA1|8.4e-08|20.9|115/0|a.118.8.1|1/1|TPR-like| OP:NHOMO 1 OP:NHOMOORG 1 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 115 STR:RPRED 79.3 SQ:SECSTR ########################ccHHHHHHHHHHTTcHHHHHHHHHHHHHHcTTcHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccHHHHHHcHHEEEEETTEEEEHHTcccTTTccccccHHH###### DISOP:02AL 1-3, 107-108, 111-112, 136-145| PSIPRED ccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccc //