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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ21480.1
DDBJ      :             conserved hypothetical protein
Swiss-Prot:Y660_PELUB   RecName: Full=UPF0317 protein SAR11_0660;

Homologs  Archaea  0/68 : Bacteria  110/915 : Eukaryota  69/199 : Viruses  0/175   --->[See Alignment]
d.382.1
:261 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   23->252 3db9A PDBj 9e-50 46.6 %
:RPS:PDB   7->252 3db9A PDBj 5e-18 40.6 %
:RPS:SCOP  9->252 2pifA1  d.382.1.1 * 1e-87 45.4 %
:RPS:PFM   111->252 PF07286 * DUF1445 2e-47 61.0 %
:HMM:PFM   110->252 PF07286 * DUF1445 3.1e-67 59.9 142/143  
:BLT:SWISS 1->261 Y660_PELUB e-157 100.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21480.1 GT:GENE AAZ21480.1 GT:PRODUCT conserved hypothetical protein GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(645176..645961) GB:FROM 645176 GB:TO 645961 GB:DIRECTION - GB:PRODUCT conserved hypothetical protein GB:PROTEIN_ID AAZ21480.1 GB:DB_XREF GI:71062477 LENGTH 261 SQ:AASEQ MLDIKNPIEARKVIRKNEYRNQTAGTANKYVQGNLCILPSKYAMDFASFCQKNPKPCPLIGFGTKGDPSLKDLGDIDIRTDVPQYRIWEKGKIIDEPYDIKKYWNEDLTTFVLGCSMSFELPLIEAGIPIQHIENDTIVPMYRTSIDCEPAGQFSGKLVVSMRPLNSKDAIRSIQISSRFPAVHGAPIHLGDPSEIGIKDIMNPEYGDPPKAFKNNEIPVFWACGVTPQSVLQDSKPDFCITHAPGKMLITDKLNNDLAAL GT:EXON 1|1-261:0| SW:ID Y660_PELUB SW:DE RecName: Full=UPF0317 protein SAR11_0660; SW:GN OrderedLocusNames=SAR11_0660; SW:KW Complete proteome. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->261|Y660_PELUB|e-157|100.0|261/261| BL:PDB:NREP 1 BL:PDB:REP 23->252|3db9A|9e-50|46.6|208/235| RP:PDB:NREP 1 RP:PDB:REP 7->252|3db9A|5e-18|40.6|224/235| RP:PFM:NREP 1 RP:PFM:REP 111->252|PF07286|2e-47|61.0|141/143|DUF1445| HM:PFM:NREP 1 HM:PFM:REP 110->252|PF07286|3.1e-67|59.9|142/143|DUF1445| RP:SCP:NREP 1 RP:SCP:REP 9->252|2pifA1|1e-87|45.4|238/252|d.382.1.1| OP:NHOMO 234 OP:NHOMOORG 179 OP:PATTERN -------------------------------------------------------------------- ----11--1111-1-------1----------------11----1--1------121-----1-1-111--1-------11-1--------------------------------------------------------------------------------------------------------------1-----------------1111----1--1----------1--------------1--11-----------------------------------------------------------------------1--1-----------------------------------1--11-------------------111--111111--------------1--1-1----1111--11----11---211------1---------11----------------------------------1------11111-1111-----1111------11-111--------1--1-1-11-----------------------------------------------------1--------------------------------------------------------1---------------------------------------------------------------------------------------------------------------------------------11111111----1111---------11-1----------111------------------------------------------------------------------------------------ ---------------11---11-111111-----------------1111--1-1-1------1--12------------1------1----1---1-121--------16-1111211---1-51-418E5-224-11--11-1-111-1111-1111-36-----------2------------------11----1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 246 STR:RPRED 94.3 SQ:SECSTR ######cTTHHHHHHHTccccccTTccTTEEEEcEEEEcHHHHHHHHHHHHHcTTTccccEEccTTccccTTcTTccTTTccccEEEEETTEEEEcccccHHHHTTTcEEEEccccccTcTTcEEEEcccTTTTTTccccEEEEEEEccccTTcccEEEEEEEEEEETTccHHHHHHTHHHHHHHcccEEccGGGGTcccTTccTTccccccccTTEEEEEEEcTHHHHHHHHHTTccEEEEEcTTccEEEE######### DISOP:02AL 1-5| PSIPRED ccccccHHHHHHHHHcccccccccccccccccEEEEEEHHHHHHHHHHHHHcccccccEEEEccccccccccHHHHHHHHcccccEEEEccEEcccHHHHHHHHHcccEEEEEEccHHHHHHHHHcccccccccccccccEEEccccHHHcccccccEEEEEccccHHHHHHHHHHHHHccccccccEEEccHHHHHHHHcccccccccccccccccEEEEEcccccHHHHHHHcccccEEEccccEEEEEccccccEEcc //