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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ21493.1
DDBJ      :             short chain dehydrogenase
Swiss-Prot:             

Homologs  Archaea  43/68 : Bacteria  863/915 : Eukaryota  195/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:253 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   5->191 2uvdA PDBj 1e-19 27.3 %
:RPS:PDB   4->209 1a27A PDBj 2e-37 24.5 %
:RPS:SCOP  4->209 1a27A  c.2.1.2 * 6e-38 24.5 %
:HMM:SCOP  1->230 1w4zA_ c.2.1.2 * 3.3e-52 30.0 %
:RPS:PFM   5->163 PF00106 * adh_short 3e-16 31.4 %
:HMM:PFM   5->165 PF00106 * adh_short 5.2e-26 27.4 157/167  
:BLT:SWISS 40->240 Y5909_MYXXD 2e-27 31.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21493.1 GT:GENE AAZ21493.1 GT:PRODUCT short chain dehydrogenase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(658050..658811) GB:FROM 658050 GB:TO 658811 GB:DIRECTION - GB:PRODUCT short chain dehydrogenase GB:PROTEIN_ID AAZ21493.1 GB:DB_XREF GI:71062490 LENGTH 253 SQ:AASEQ MEDKKVIWITGASSGIGKALAIKFAENGWMVAASARRENLLNELKKINQNIFPFPLDVTEVDACKLVAKDIIKQFNNIDICVFGTGMHDPKSEKKFNLDKIREIMEVNYFGTMNSINSIYDYFSEKKNGQISIISSVAGYRGLPAAGAYCASKSALTSFAESLNFDMRMKNVRVSLISPGFIKTPMTDQNDFPMPMIKTPEFAADEIYKGLVIKKSFEIHFPKAFTYFLKFLQMLPSSLYFKLVARGMKKIDY GT:EXON 1|1-253:0| BL:SWS:NREP 1 BL:SWS:REP 40->240|Y5909_MYXXD|2e-27|31.0|200/253| BL:PDB:NREP 1 BL:PDB:REP 5->191|2uvdA|1e-19|27.3|187/246| RP:PDB:NREP 1 RP:PDB:REP 4->209|1a27A|2e-37|24.5|204/285| RP:PFM:NREP 1 RP:PFM:REP 5->163|PF00106|3e-16|31.4|159/169|adh_short| HM:PFM:NREP 1 HM:PFM:REP 5->165|PF00106|5.2e-26|27.4|157/167|adh_short| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 1 RP:SCP:REP 4->209|1a27A|6e-38|24.5|204/285|c.2.1.2| HM:SCP:REP 1->230|1w4zA_|3.3e-52|30.0|230/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 9287 OP:NHOMOORG 1101 OP:PATTERN 111-1-3743433343-31----164453526-1---------11-43--612-11----12523135 ADM1D113447572UbQHG-HQ44PhHGHHHLOUbVCcbY1B6N8534272-A864141155C27AABB65-111---2244E1231177A625111--97O4C7*BN5C1111111111111145647853339575566111B3F8ED98666111213342235EBR74133222133-2C563365297GBBABBDBCDBEBFEBCBIICIBBE6B9EECC9778979Q64444433334443389997627156152229C446664427A88744543333444554556555555446666744674543225556425785555545446525527A733211183115411112422211344352AD77822222M7OFH432BAE977887778778H-AC8A8CCFGKH2XOOFUNNVcSPQ79984A89858A98A777777774CC94599--1121111112-122-111-2--21112879F577772BVPQLSNACCDBGGYOCBCC6AVIPASKC4689A65366C6G8F88C81676751232122447CB67G4B31122-333125774722333633BC143222222222123333333342316336556BABAE97644447B8645595896891-2435511-11179FF3F77776766656-7575656466756777779CFEA78678669898978878799F5555556215767777777761-1622222EFCD3BDCD222425211123241EFHHG7F69B92BEAB79HIGB8GAAFBD7444464442477C7677699888354363211142322144ED98BA--------2-3----2---2-1------2-------2442136433361 1112daA-612136CLHKHMLKKNLNSBC99AA7CA7CBBACB644KIOYJTZd9JIABCAE44F685465595933455678A7895-HjHH5LA2534439FB8-74C*WaLKRF85A5FK9cT6S9W*O-KMNB587M8EQJ7DB69I25IDGJTSVgRFUOFAKHRSHXKT6652G3233HFABUJPB59DCDB5 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 253 STR:RPRED 100.0 SQ:SECSTR GGTcEEEEEcccccHHHHHHHHHHHTcTTccEEEEEEEccGGGTHHHHHcEEEEEccTTcHHHHHHHHHTcTTccccEEEEcccccccccGcGGGccHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTcEEEEEEEEGGGTcccTTcHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEccccccTTTTccHHHHHHHccHHHHHHHHHHHHcccccEEEcccTTHHHHHHHHTcTTHHHHcHHHHHHHHHHc DISOP:02AL 1-2, 251-253| PSIPRED cccccEEEEEccccHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHHHHHccEEEEEEcccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccHHHcccccccccccHHHHHHHHHHHHHccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc //