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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ21495.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  18/68 : Bacteria  81/915 : Eukaryota  73/199 : Viruses  0/175   --->[See Alignment]
c.3.1
:367 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   17->340 1y56B PDBj 5e-19 29.6 %
:RPS:PDB   15->354 1b3mA PDBj 1e-28 21.2 %
:RPS:SCOP  14->255 1ng3A1  c.3.1.2 * 6e-14 14.9 %
:RPS:SCOP  285->354 1el5A1  c.3.1.2 * 7e-10 34.8 %
:HMM:SCOP  1->355 1pj5A2 c.3.1.2 * 2.1e-30 27.8 %
:RPS:PFM   15->333 PF01266 * DAO 8e-13 29.0 %
:HMM:PFM   3->336 PF01266 * DAO 7.1e-55 27.3 326/358  
:BLT:SWISS 15->354 FXRD1_MACFA 1e-56 42.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21495.1 GT:GENE AAZ21495.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 659309..660412 GB:FROM 659309 GB:TO 660412 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:NOTE similar to FAD dependent oxidoreductase family GB:PROTEIN_ID AAZ21495.1 GB:DB_XREF GI:71062492 LENGTH 367 SQ:AASEQ MDDVVIVGGGIIGTATAYFLSKEGRKVKVIERDPTYKTASFPLSLGGFRRQFFQKENILLGKFAREFIFQIPELLKTEKNPNPTASMVTNGYLLMFGPEHAEEQYEALKNHEACEAGTKNIKGSELSKIFPYINSEGIETATYTDNQSEGWIDPFMFHSALKSKAIELGAEFIKGEVKNISDIKAKTIISAAGCWTKELLKDIPVVPQKHTVFRVKCPKYIKEMPLTGDLTTGVYWRPEGGEYLAGSPNSVFDATDLEPAWNDFEELVWPALAQRIPAFEELKLTGGWAGYYDCNKLDNNAVVGKHPKYENVYMASGFTGRGLMQAPGIGRALTELISTGSYQTIDISDFSVERVLDNNARPEPYVL GT:EXON 1|1-367:0| BL:SWS:NREP 1 BL:SWS:REP 15->354|FXRD1_MACFA|1e-56|42.0|338/486| SEG 4->13|vvivgggiig| BL:PDB:NREP 1 BL:PDB:REP 17->340|1y56B|5e-19|29.6|304/374| RP:PDB:NREP 1 RP:PDB:REP 15->354|1b3mA|1e-28|21.2|330/385| RP:PFM:NREP 1 RP:PFM:REP 15->333|PF01266|8e-13|29.0|310/354|DAO| HM:PFM:NREP 1 HM:PFM:REP 3->336|PF01266|7.1e-55|27.3|326/358|DAO| GO:PFM:NREP 1 GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF01266|IPR006076| RP:SCP:NREP 2 RP:SCP:REP 14->255|1ng3A1|6e-14|14.9|235/276|c.3.1.2| RP:SCP:REP 285->354|1el5A1|7e-10|34.8|66/281|c.3.1.2| HM:SCP:REP 1->355|1pj5A2|2.1e-30|27.8|255/0|c.3.1.2|1/1|FAD/NAD(P)-binding domain| OP:NHOMO 220 OP:NHOMOORG 172 OP:PATTERN --1-1-1---------11111-1-------------------------------22222121--1--- -12-------1----------1---1------21111-13-------1------------------11--------------------------------------------------------------------11111---12-------------------------------------1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------1--1--------------------------------------------13--1-----1---111-----1-1-111-----------------1-----------------------------1------11--1-1111211111122111111111--1-----11------1112--------------------1---1-------------------------11-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------111-1-1------ ------2--------1-----1-1-1-------------------------1-1-----------------------------------------------------11-2121111111-111121211B1-1111-1-11112-111-11-1111112511111142311123----------------1-12111- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 352 STR:RPRED 95.9 SQ:SECSTR ##############HHHHHHHHTTccEEEEccccccccccccGcccEEEEccccTTcTTHHHHHHHHHHHHHHHHHHcHHHcccccEEcccEEEEEETTccHHHHHHHHHHHHHTcccEEEETHHHHHHcTTccccTTEEEEEETTcEcEEEEHHHHHHHHHHHHHHTTcEEEcccEETTEEEEEEEEEEccGGGHHHHGGEcccEEEEEEEEEEcccHHHHcGGGEETTEEEEEEcccTTccEEEEEccccEEccTTTccccTTHHHHHHHHHHcGGGcGccEEEEEEEEEEEcTcTcccEEEEETTEEEEEEEEccTTccGGGHHHHHHHHHHHHHHccEcccccGGGcTTcHTTccTTccTTc# DISOP:02AL 367-368| PSIPRED cccEEEEccHHHHHHHHHHHHHccccEEEEEccccccccccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEccEEEEccHHHHHHHHHHHHHHHHcccccEEccHHHHHHHccccccccEEEEEEEcccccEEEcHHHHHHHHHHHHHHcccEEEEEEEEEEEEEEccEEEEccccccHHHHccccEEEEEEEEEEEEcccccccccEEEccccEEEEEEEccEEEEEEcccccccccccccHHHHHHHHHHHHHHHcccccccEEEEEEEccEEccccccccEEccccccccEEEEEccccHHHHHHHHHHHHHHHHHHcccccccccHHccHHHHcccccccccccc //