Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ21513.1
DDBJ : HI0933-like protein
Swiss-Prot:
Homologs Archaea 7/68 : Bacteria 552/915 : Eukaryota 17/199 : Viruses 0/175 --->[See Alignment]
c.3.1
e.74.1
:393 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB 17->387 2gqfA PDBj 2e-82 47.6 %
:RPS:PDB 3->393 1d4cB PDBj 2e-19 16.4 %
:RPS:SCOP 2->191 2gqfA1 c.3.1.8 * 2e-45 39.5 %
:RPS:SCOP 191->337 2gqfA2 e.74.1.1 * 8e-38 38.6 %
:RPS:SCOP 329->391 2gqfA1 c.3.1.8 * 2e-24 60.3 %
:HMM:SCOP 1->393 1kf6A2 c.3.1.4 * 2.2e-30 23.2 %
:RPS:PFM 17->391 PF03486 * HI0933_like 1e-84 46.8 %
:HMM:PFM 5->392 PF03486 * HI0933_like 2.7e-144 45.5 387/409
:BLT:SWISS 3->380 YHIN_ECOLI 2e-97 49.5 %
:SEG
SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21513.1
GT:GENE AAZ21513.1
GT:PRODUCT HI0933-like protein
GT:DATABASE GIB00256CH01
GT:ORG pubi0
GB:ACCESSION GIB00256CH01
GB:LOCATION 677178..678359
GB:FROM 677178
GB:TO 678359
GB:DIRECTION +
GB:PRODUCT HI0933-like protein
GB:PROTEIN_ID AAZ21513.1
GB:DB_XREF GI:71062510
LENGTH 393
SQ:AASEQ MTEQFDVIVVGAGAAGMMSAIEAGKRGRKVLLVDHAKKIGEKIRISGGGRCNFTNIHTHPSKFISNNPKFVISALKQYTQNNFIDLIKKHNIKFHEKKLGQLFCDESAQQIIDMLLLECEMAKVVLKKDTTIDDIDKQDDNYFIVVGSDKYFSQSLIIATGGLSIPKIGASKFGYDIAQKFGLKVIETLPALVPLTFSEKILAICKELTGLSVEAVVSFKKTFFEEGMLFTHRGLSGPSILQISSYWKLGDNIKVNLSPKLDVDKFLNDRKISSPKQDIGIIVSEILPKRLAHIICNENNVNGNICELSNKVLTSLSNSINAWVINPIGTEGYRTAEVTLGGIDTEEISSKTMMSNKHPGLFFIGEVVDVTGHLGGYNFQWAWSSGYVAGQYA
GT:EXON 1|1-393:0|
BL:SWS:NREP 1
BL:SWS:REP 3->380|YHIN_ECOLI|2e-97|49.5|378/400|
SEG 7->16|vivvgagaag|
SEG 127->140|kkdttiddidkqdd|
BL:PDB:NREP 1
BL:PDB:REP 17->387|2gqfA|2e-82|47.6|361/394|
RP:PDB:NREP 1
RP:PDB:REP 3->393|1d4cB|2e-19|16.4|385/566|
RP:PFM:NREP 1
RP:PFM:REP 17->391|PF03486|1e-84|46.8|370/394|HI0933_like|
HM:PFM:NREP 1
HM:PFM:REP 5->392|PF03486|2.7e-144|45.5|387/409|HI0933_like|
RP:SCP:NREP 3
RP:SCP:REP 2->191|2gqfA1|2e-45|39.5|190/253|c.3.1.8|
RP:SCP:REP 191->337|2gqfA2|8e-38|38.6|145/148|e.74.1.1|
RP:SCP:REP 329->391|2gqfA1|2e-24|60.3|63/253|c.3.1.8|
HM:SCP:REP 1->393|1kf6A2|2.2e-30|23.2|233/312|c.3.1.4|1/1|FAD/NAD(P)-binding domain|
OP:NHOMO 627
OP:NHOMOORG 576
OP:PATTERN --------------------------------11---------11111-------------------- 111---------------------------------------------------------------------------1--1-----------------111111111-1--------------111111-11111-----222--111-111--11111111111-11111111111111-1-------2111111111111111112111111111111111111111111121111111111211111111----------------------11111111111111111111111111111111111111111111111-222222222222221222233322122-221-2222-1-11-111---11-1111---------------1---11111-11111-----------1-111111111111--1-11111111111111111111111-11------------------------------11111-111111111111111111111111-11111111111111111111111-11-----1--------111111--1-11111111111-------1-------1-321-----------------32113--11-111111111111111111111111111--1111-------1111-111111111111-111111111111111111111111111111111111111111111111111--111111111111---1-----1111-111111-111111-1111111111111111-111111111111111111-2--111-1111111111111111111111111------1-111-11----------1---------------------------1--------1- ------------------------------------------------------------------------------------------------------------21-----------------------------------------------------------------111--111111--1-11111---- -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
STR:NPRED 393
STR:RPRED 100.0
SQ:SECSTR ccEEccEEEEcccHHHHHHHHHHHHHTccEEEEcccccccTTGGGccccEEccccHHHHHHTTccccHHHHHHHHHHHTTTHHHHHHHHTTccccEEEccTTcccccEEEHHHHHHHHHHHTTcEEEccEEEEEEEEcccccEEEEEEEEEEccEEEEccccEEcccTTcccHHHHHHHTTTccEEcTTcEEEEEEEcTTcccccTHHHHTTcEEEcccccccccTTccHHHHHHHHHTcTTccEEEEEEHHHHHHcTHHHHHHHTTccEEEccHHHHHHHHHTTccHHHHHHHHHHHHHHHHHHHHTccccccccccccccccccEEEEEEEEEEEEEccEEEccTEEEcTTTccEEEEEEEccTTEcTTcccTTHHHHHHHHHHHHHHHHH
DISOP:02AL 1-2, 270-280|
PSIPRED ccccccEEEEcccHHHHHHHHHHHHccccEEEEEcccccccccEEccccEEEEccccccHHHHccccHHHHHHHHHHccHHHHHHHHHHcccEEEEEcccccEEcccHHHHHHHHHHHHHHcccEEEEccEEEEEEEEcccEEEEEccEEEEEEEEEEEccccccccccccHHHHHHHHHcccEEEcccccEEcEEcccHHHHHcccccccccHHEEEcccEEEEccEEEEEccccHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccHHHHHHHHHHHHccEEEEEccccHHHHHHHcccccHHHccHHHHHHHccccEEEEEEEEEccccccHHHHHHHHHHHHHHHccc
//
[GTOP]
