[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ21534.1
DDBJ      :             Predicted permease YjgP/YjgQ family protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  55/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
:378 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   140->252 1r19D PDBj 6e-04 26.4 %
:RPS:PFM   17->239 PF03739 * YjgP_YjgQ 5e-08 22.3 %
:HMM:PFM   12->371 PF03739 * YjgP_YjgQ 6.8e-41 21.6 342/355  
:BLT:SWISS 4->251 Y871_RICPR 4e-12 19.6 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21534.1 GT:GENE AAZ21534.1 GT:PRODUCT Predicted permease YjgP/YjgQ family protein GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(698741..699877) GB:FROM 698741 GB:TO 699877 GB:DIRECTION - GB:PRODUCT Predicted permease YjgP/YjgQ family protein GB:PROTEIN_ID AAZ21534.1 GB:DB_XREF GI:71062531 LENGTH 378 SQ:AASEQ MKKIVYKKLSKDCVNFFLLVVFTISIIIWVLQAVNYLDFVIEDGHGFLVYFKYTLLSFPKIISRIFPFAIFLAFSYILLKYENKNELVIFWNFGIKKINFINFFIKFSLWFVLISLLLNAVITPFAQDKARSFIRSSNLDFFESVLKPKKFIDIIGNLTIYFDEKNKKGELINIFLNEKTDINNSQTTFAKTAIVNIDNNKKILTLYDGKSINVINGKISEFEFSKTDYNISKFNSNTITYQKTQEAKTINLIKCSLFFNGSIINSTNIEIENIKNCRLDNLKNVYKELYSRLVKPLYITFLISISLLFILKSKSDHSFNINKFKIYLFAFLFIIFLESSSKLISTNLMQNIFLSIFPLILTLIIYLYFVIKLKINKV GT:EXON 1|1-378:0| BL:SWS:NREP 1 BL:SWS:REP 4->251|Y871_RICPR|4e-12|19.6|245/360| TM:NTM 6 TM:REGION 15->37| TM:REGION 54->76| TM:REGION 98->120| TM:REGION 291->312| TM:REGION 325->347| TM:REGION 351->372| SEG 89->107|ifwnfgikkinfinffikf| SEG 260->276|ngsiinstnieienikn| SEG 299->315|itflisisllfilksks| SEG 323->345|kfkiylfaflfiiflesssklis| BL:PDB:NREP 1 BL:PDB:REP 140->252|1r19D|6e-04|26.4|110/292| RP:PFM:NREP 1 RP:PFM:REP 17->239|PF03739|5e-08|22.3|215/354|YjgP_YjgQ| HM:PFM:NREP 1 HM:PFM:REP 12->371|PF03739|6.8e-41|21.6|342/355|YjgP_YjgQ| GO:PFM:NREP 1 GO:PFM GO:0016021|"GO:integral to membrane"|PF03739|IPR005495| OP:NHOMO 55 OP:NHOMOORG 55 OP:PATTERN -------------------------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--1-1--11111--11111111111111--111111111-1--11-11111-1111----------1-----------11-----------------11--1111-11------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 110 STR:RPRED 29.1 SQ:SECSTR ###########################################################################################################################################TTcccEEETTTTccEEEEEEEEEcTTccTTccEEEEccTTEETTTTEEEEccTTTccEEEEEEEEEEEcTTTcccTTEEE#EEEcEETTcccEE##EEEEEccccEEETTEEE############################################################################################################################## PSIPRED cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccEEEEccccEEEEEEEEccccEEEEEEEEEcccccccEEEEEccEEEEEEcccEEEEEEccEEEEEccccEEEEEEccEEEEHHHccccccccccHHHccccHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc //