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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ21553.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  47/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
:730 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   196->586 1ddqC PDBj 1e-04 7.0 %
:HMM:PFM   1->73 PF01594 * UPF0118 0.001 22.7 66/327  
:BLT:SWISS 50->192 SECA_CAMJR 1e-04 29.0 %
:BLT:SWISS 549->649 THIC_METMJ 4e-04 27.3 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21553.1 GT:GENE AAZ21553.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 717174..719366 GB:FROM 717174 GB:TO 719366 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:PROTEIN_ID AAZ21553.1 GB:DB_XREF GI:71062550 LENGTH 730 SQ:AASEQ MKRIVKILAILIITLAAIVIYLSLYGVKTDKFNKEIIKNVSKINKKINLSLNEVNYLLNPMNFSINISTKNPKILLEDKSLDLKDITSNISLKSFISNQFSIDDLKISTKEIKIKDLISLTRAVEGSPQLFVLDSITKEGLISTDINLKFDLDGEIKNNYQITGNVKKAKFNIFNKVEIDDLNLLFNISNNQLTLKKIETNLNSIKLKSPLIKIEKKKDIFFVDGEVANEEQNFDINKLKPIFGDLLNNIEIEKIDFNSINIFSFNVNRKLKLKDLKLETNLNLENFQIVKNPLNLKTFLPNYAEQIKFKDHKIKIKLIKGILDIRGDGDIYIGDESEQLSYNVIKDAGEIKFDTNLNIKNNPLTINFLDYKKKKGNSSEILLKGIYKKNKELILKDISLTEKNNQILIKDLMFSKNFKVKDLSYIKLNYRNKNDLLNNLELKKNKSNFSINGKSFDATQLINNSMSDDESTAIFENFNSKFDIKIGTAYINKNDYTKNLAGYFTFKNNKLDKLNLASTFPNKKKMNLSIETNNQNETITKFFSNYPKPLIKRYDFIKGFEEGYLNFNSIKKDGVSNSVLIIDNFKVKEVPVFAKLLSLASLQGIADLLTGEGIRFTDFEMRYSSQKGLTNIEEMYAIGPAISILMDGYIESKKLVSLRGTLVPATTINRSIASIPLLGKILIGEKTGEGVFGVSFKIKGPPKNLSTTVNPIKTLTPRFITRTLEKIKKN GT:EXON 1|1-730:0| BL:SWS:NREP 2 BL:SWS:REP 50->192|SECA_CAMJR|1e-04|29.0|138/862| BL:SWS:REP 549->649|THIC_METMJ|4e-04|27.3|99/424| TM:NTM 1 TM:REGION 5->27| SEG 4->20|ivkilailiitlaaivi| SEG 33->48|nkeiiknvskinkkin| SEG 257->266|fnsinifsfn| SEG 307->335|ikfkdhkikiklikgildirgdgdiyigd| SEG 432->448|nkndllnnlelkknksn| RP:PDB:NREP 1 RP:PDB:REP 196->586|1ddqC|1e-04|7.0|344/1112| HM:PFM:NREP 1 HM:PFM:REP 1->73|PF01594|0.001|22.7|66/327|UPF0118| OP:NHOMO 47 OP:NHOMOORG 47 OP:PATTERN -------------------------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11-11-111---1------------11111-1-1-1---------------11111-1-11111--------1---11111111111111---------------11111------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 344 STR:RPRED 47.1 SQ:SECSTR ###################################################################################################################################################################################################cccccccccccccTTGGGGcTHHHHHHccccccTTcccGGGTTHHHHHcccccccTTccccEEccccccEEccccccTTHHHHTTccccccEEcccccEEcccccccc###############################ccccccccccccccccccTTcccccccccccccccccccccTTTTcccEEEccccTTccccEEEcccccccccEEcccccccHHHHHHHHcccccc################ccccccccccccTTTcTTTTTcccHHHHHHHHHHHccTTcccccccccTTTTTcccccccGGGcccccTTTGGGGTccccccccccccccccccccHHHHHHHHHTTcccccccccccTTTccccccccHHHHHHHHHHH################################################################################################################################################ DISOP:02AL 1-2, 463-480, 729-730| PSIPRED cHHHHHHHHHHHHHHHHHEEEEEEEEEEcccccHHHHHcEEEEEEEEEEEHEEEEEEEcEEEEEEEEEEEEEEEEEEcccccHHHHHHHcccccEEcccEEEccccccHHHcccccEEEEEEEEcccEEEEccccccccEEEEEEEEEEEEEcEEEcccEEEEcccccEEEEEccccEEEccEEEEEEEccEEEEEEEEEEccEEEEEcccEEEEcccEEEEEEHHHEEHHHHccccccccEEEEcccEEEEEEccccccccEEEEEEEEEEEEEEEEccccccHHEEEccccEEEEcccEEEEEEccccccEEEEEEcccEEcccccccEEEccccEEEEEEEEccccccEEEccccccEEEEEEcccccccccccccEEEEEEEEcccccEEEEEEEEEEcccEEEEEEEEEcccccEEEEEEEEEcccccccEEEEEEEcccccEEEEEccEEEHHHHHHHcccccccccccccccccccEEEEEEEEEcccEEEEccEEEEEEccEEEEEEEEEEcccccEEEEEEEcccccEEEEEEEEccccHHHHHcccHHHccccEEEEEcccccccEEEEEEEEccEEEccHHHHHHHHHHHcHHHHHccccccEEEEEEEEEEEEcccEEEEEEEEEEEEEEEEEEEEEEccccEEEEEEEEEEEEEHHHHHHcccEEEEEEcccccccEEEEEEEEEEccccccEEEEEEHHHHcHHHHHHHHHHHHcc //