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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ21568.1
DDBJ      :             ABC transporter
Swiss-Prot:             

Homologs  Archaea  15/68 : Bacteria  290/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
f.39.1
:295 amino acids
:PSIPRED
:DISOPRED
:RPS:SCOP  43->138 1s7bA  f.39.1.1 * 7e-06 9.5 %
:HMM:SCOP  41->149 1s7bA_ f.39.1.1 * 9.4e-12 21.9 %
:HMM:SCOP  186->295 1s7bA_ f.39.1.1 * 2.4e-11 23.8 %
:RPS:PFM   17->141 PF00892 * EamA 2e-04 23.4 %
:HMM:PFM   17->141 PF00892 * EamA 1.3e-22 26.8 123/126  
:HMM:PFM   169->286 PF00892 * EamA 8.7e-15 22.2 117/126  
:HMM:PFM   118->175 PF11023 * DUF2614 0.00021 26.3 57/114  
:BLT:SWISS 12->269 YOAV_BACSU 2e-22 24.9 %
:TM

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21568.1 GT:GENE AAZ21568.1 GT:PRODUCT ABC transporter GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 730989..731876 GB:FROM 730989 GB:TO 731876 GB:DIRECTION + GB:PRODUCT ABC transporter GB:NOTE membrane spanning protein GB:PROTEIN_ID AAZ21568.1 GB:DB_XREF GI:71062565 LENGTH 295 SQ:AASEQ MRQPRLIDYTLLVVLALIWASAFFNIKIATESFGPITIAFLRVFFGSIPVLLLCFYKKIKIEAFSKDWYWFAIIGFVNLVLPFFLIAYGVKSVQSNLAAILMSTTPLSSTILGHFYTKNEKFNLVKTFGILIGFSGIIYLFSDNLLINDSNFISALLILLGSTCYVIGGVLTLKISKKKNENVTGSILIWAILILIPFVYFIEKPWNSIPSIESTISVVYLGMVSTGVAWLLRFKILKDNGLIFQSQVSYLIPIFGTILSYIFLKEIITPKILLSLLAVVVGIYFVKKADQKKTT GT:EXON 1|1-295:0| BL:SWS:NREP 1 BL:SWS:REP 12->269|YOAV_BACSU|2e-22|24.9|253/292| TM:NTM 8 TM:REGION 6->28| TM:REGION 35->56| TM:REGION 76->98| TM:REGION 125->147| TM:REGION 154->176| TM:REGION 182->204| TM:REGION 211->233| TM:REGION 258->280| RP:PFM:NREP 1 RP:PFM:REP 17->141|PF00892|2e-04|23.4|124/125|EamA| HM:PFM:NREP 3 HM:PFM:REP 17->141|PF00892|1.3e-22|26.8|123/126|EamA| HM:PFM:REP 169->286|PF00892|8.7e-15|22.2|117/126|EamA| HM:PFM:REP 118->175|PF11023|0.00021|26.3|57/114|DUF2614| GO:PFM:NREP 1 GO:PFM GO:0016020|"GO:membrane"|PF00892|IPR000620| RP:SCP:NREP 1 RP:SCP:REP 43->138|1s7bA|7e-06|9.5|95/106|f.39.1.1| HM:SCP:REP 41->149|1s7bA_|9.4e-12|21.9|105/106|f.39.1.1|1/2|Multidrug resistance efflux transporter EmrE| HM:SCP:REP 186->295|1s7bA_|2.4e-11|23.8|105/106|f.39.1.1|2/2|Multidrug resistance efflux transporter EmrE| OP:NHOMO 423 OP:NHOMOORG 307 OP:PATTERN ------1----------------21--1----------11221---------------111-111--- -1--1---------1----------------------1-1-----------------1----1----21-------------------11-1-------1-111---1----------------1---------1------11111--------------------------1-----1---------11111-222224443332444-133133234-12-11------3--11---111111111----------------------------------------------------------------------------1-21111111-1111-11----11----------11--1-2-1--1-1-1-------------4221---31-211--1-----1----1-----21-43332213232-----1-11----122--------------11-----------------------------1----1111--112221-1111221111111121--1-1--111-11----212---------------------1---1-1---1-1---------------------1--------------------------2111---1121-----1---------1--1-------------11---2111-1111111-11111111-1111111111--3-13--2-221111211121211-----1---1---1----111--12-----1122--2-1----12-1------11111121-11------1111--------------1---1112-111112-122---1-11-------------11--------------------------------------12--111-1---1 -----------------------------------------------------------------------------------------------------------1-1----------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-2, 291-295| PSIPRED cccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccHHcccc //