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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ21582.1
DDBJ      :             possible deoxygenase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  36/915 : Eukaryota  7/199 : Viruses  0/175   --->[See Alignment]
b.82.2
:277 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   103->239 2csgA PDBj 9e-15 13.2 %
:RPS:SCOP  103->239 2csgA1  b.82.2.12 * 4e-15 13.2 %
:HMM:SCOP  1->272 2fctA1 b.82.2.9 * 2.3e-41 24.2 %
:RPS:PFM   68->215 PF05721 * PhyH 4e-06 32.6 %
:HMM:PFM   13->222 PF05721 * PhyH 1.9e-17 19.0 195/211  
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21582.1 GT:GENE AAZ21582.1 GT:PRODUCT possible deoxygenase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 741093..741926 GB:FROM 741093 GB:TO 741926 GB:DIRECTION + GB:PRODUCT possible deoxygenase GB:PROTEIN_ID AAZ21582.1 GB:DB_XREF GI:71062579 LENGTH 277 SQ:AASEQ MSKIITKSELDLFKKDGAVLIKGKFDNAWIEKLKKGIKKGKESPSPRFVNHTKDQKLPGYYEDFWTWNLHEEFKDFIFNSPTPKIAAELLEAQKINLVMDNWFFREAGSKSSPPFHHDISYFDFEGSMCVLWLPLEPIKKEDGIAWVKGSHLWDKLFLRTRFNDGHEVDGEPGIVNGKKYELTPNILENKDNYEFLQWDLEVGDCIYFDIRTLHGGLNTVTPKKDIHRYTLRMAKENSRIIYRGDWAREERVIMEDNGYKNGDDLSGKMFPTLFETS GT:EXON 1|1-277:0| SEG 30->46|ieklkkgikkgkespsp| RP:PDB:NREP 1 RP:PDB:REP 103->239|2csgA|9e-15|13.2|136/417| RP:PFM:NREP 1 RP:PFM:REP 68->215|PF05721|4e-06|32.6|132/204|PhyH| HM:PFM:NREP 1 HM:PFM:REP 13->222|PF05721|1.9e-17|19.0|195/211|PhyH| RP:SCP:NREP 1 RP:SCP:REP 103->239|2csgA1|4e-15|13.2|136/417|b.82.2.12| HM:SCP:REP 1->272|2fctA1|2.3e-41|24.2|265/0|b.82.2.9|1/1|Clavaminate synthase-like| OP:NHOMO 46 OP:NHOMOORG 43 OP:PATTERN -------------------------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------1--------------------1-----1-1---------------------------------------------1--1-------111111-----11--------1-1111---11---1----1--------------------------------------------------------------------------------------------------------------------------------------------------------------------11-----------------------------------------------------1111--------------------------1----------1-1--1----1-------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------1-4----------------------------------------------------1---------1-----------1-----1------1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 248 STR:RPRED 89.5 SQ:SECSTR #ccccccTHHHHHHHHcEEEETTcccHHHHHHHHHHHHHHHTTccccc#ccEEEccEEEccccHTTcccEETTEEccEEEEEccccccEEccccTHHHHcHHGccTTccTTGGGccccccTTccccccEEEEEEcccccTTcccEEEccGGGHHHHHHGGGcTTccTcTccTTccTTccEEccTTTcHHHHTTcEEcccccTTcEEEEETTccEEEcccccccccccEEEccccEEcHH##HHHHHHHHHHH######################### DISOP:02AL 1-2| PSIPRED ccccccHHHHHHHHHccEEEEcccccHHHHHHHHHHHHHHHHcccHHHEEccccccccccHHHHccccccHHHHHHHHcccHHHHHHHHHcccccEEEEEEHHcccccccccccccccccEEEccccEEEEEEEEccccccccEEEEEccccccccccccccccccccccccccccccccccccccccHHHccccEEcccccccEEEEcccEEEccccccccccEEEEEEEEEEcccEEEEEccccccccccccHHcccccccccccccccEEEEcc //