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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ21588.1
DDBJ      :             ABC-type sugar transport system
Swiss-Prot:             

Homologs  Archaea  30/68 : Bacteria  448/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
f.58.1
:290 amino acids
:PSIPRED
:DISOPRED
:RPS:SCOP  51->277 2r6gF2  f.58.1.1 * 3e-11 19.9 %
:HMM:PFM   83->281 PF00528 * BPD_transp_1 5.4e-16 20.5 176/185  
:BLT:SWISS 24->287 Y1215_PYRHO 6e-37 31.4 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21588.1 GT:GENE AAZ21588.1 GT:PRODUCT ABC-type sugar transport system GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 747047..747919 GB:FROM 747047 GB:TO 747919 GB:DIRECTION + GB:PRODUCT ABC-type sugar transport system GB:NOTE permease component GB:PROTEIN_ID AAZ21588.1 GB:DB_XREF GI:71062585 LENGTH 290 SQ:AASEQ MFWLKKNLPKLVLVPSLGILSWFVYGFIFWTIYISFTKSKMLPRYEIWGIDQYIRLWNMPRWHVAVENLLIFTVLFIILCIAIGILLSILLDQKIRAEGFLRTIYLYPMALSFIVTGTAWKWVLNPTLGIEKFVNDMGFETFKFDWLVTPEMSIYTIVIAGVWQSSGFIMAIFLAGLRSVDDEIIKAAKIDGAGIFSIYSKIILPMMRPVFMSAIVILVHLSIKSYDLIIALTSGGPGISSDMPAVFMTAMAFHRSEVGLASASAIMMFLTVSAIVVPYLYSELKRENAR GT:EXON 1|1-290:0| BL:SWS:NREP 1 BL:SWS:REP 24->287|Y1215_PYRHO|6e-37|31.4|264/292| TM:NTM 6 TM:REGION 10->32| TM:REGION 69->91| TM:REGION 104->126| TM:REGION 155->177| TM:REGION 203->225| TM:REGION 260->282| SEG 4->17|lkknlpklvlvpsl| SEG 181->195|ddeiikaakidgagi| HM:PFM:NREP 1 HM:PFM:REP 83->281|PF00528|5.4e-16|20.5|176/185|BPD_transp_1| RP:SCP:NREP 1 RP:SCP:REP 51->277|2r6gF2|3e-11|19.9|226/244|f.58.1.1| OP:NHOMO 2080 OP:NHOMOORG 479 OP:PATTERN 11--3--11211212-5-2231--61131-2------------------------231-11321---- ---1M2-3333-1112223-3-3348333334144413352-21FnK27651IDF117--6484516AGB162229741---3-------------------------1---------------------------56677---73221311-11222212212221333--2-----1----C714389-842222222331132223JB443322343717244344339n1-------------------231-22--11111--22-----3----1-1111211344344433341111111111111222---222244-39111112141462--1222C-1322-6--22---1G---76592-1-------111112-DAA1--535536766677777D---5--2-19M--TLLFWTMgfYRO-----6B66557C74--------2--1--12-----------------------------2---2--32324665544122233883332224361222--2227-133125449----1--2--------------1-2---11--11111---------221223----------1------------------114-------5----------------------1----------353-11------------------------------23255--1----------------3-1-------355555555555---------11111-76C--------------1------------11111122222222333-------------------1-211--111111111111-------------------1---------------------1----4JD889N8A8-1- --------------------------------------------------------------------------------------------------------------------------------------------------------------2---------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 289-290| PSIPRED ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc //