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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ21589.1
DDBJ      :             ABC-type sugar transport system
Swiss-Prot:             

Homologs  Archaea  28/68 : Bacteria  513/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
f.58.1
:300 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   56->300 2r6gG PDBj 2e-13 27.4 %
:RPS:SCOP  33->300 2r6gG1  f.58.1.1 * 2e-24 19.9 %
:HMM:PFM   109->286 PF00528 * BPD_transp_1 3e-17 20.7 169/185  
:BLT:SWISS 24->300 Y1216_PYRHO 8e-44 38.0 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21589.1 GT:GENE AAZ21589.1 GT:PRODUCT ABC-type sugar transport system GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 747909..748811 GB:FROM 747909 GB:TO 748811 GB:DIRECTION + GB:PRODUCT ABC-type sugar transport system GB:NOTE permease component GB:PROTEIN_ID AAZ21589.1 GB:DB_XREF GI:71062586 LENGTH 300 SQ:AASEQ MQDKEKLNLNRLEANSKRKNIIYRWILYFILGIFVFYYLTPLYVMIVTSFKTMPEIRQGNLFSLPESIKFDAWKQAWDGAGFTGGDVVLKPYFWNSIKLVVPAVIISTLLGAINGYALTKWRFKGDSYIFLLFLFGTFIPYQAILLPMARTLGVLGMSNSISGLILVHVVYGVCFTTLFCRNYYVSISDEMVRAARIDGAGFFKIFFKIILPISIPILVVTVIWQFTQVWNDFLFGATFSFGEAAPIQVALNNLVLTSTAVKRYNVDMAAAIITGVPTLIVYILAGNYFIKGLTAGSVKG GT:EXON 1|1-300:0| BL:SWS:NREP 1 BL:SWS:REP 24->300|Y1216_PYRHO|8e-44|38.0|266/275| TM:NTM 6 TM:REGION 26->48| TM:REGION 94->116| TM:REGION 128->150| TM:REGION 155->177| TM:REGION 204->226| TM:REGION 266->288| SEG 202->218|ffkiffkiilpisipil| BL:PDB:NREP 1 BL:PDB:REP 56->300|2r6gG|2e-13|27.4|237/284| HM:PFM:NREP 1 HM:PFM:REP 109->286|PF00528|3e-17|20.7|169/185|BPD_transp_1| RP:SCP:NREP 1 RP:SCP:REP 33->300|2r6gG1|2e-24|19.9|267/284|f.58.1.1| OP:NHOMO 2385 OP:NHOMOORG 544 OP:PATTERN 22--3--12333233161222---3--31-1------------------------231--1311---- ---1U2-2333-1123344-4133464444431121144651-4DoU2AD92JHG117--6456849JRG37555EA8----3-------------------------1---------------------------67766---65121311-11111-11112121333--1-----1----CC234AC-753222222221132223PD8847223548-7455676667*111111111111111-----331-11--11122--11---1-4-132324233322444555544443222233332222333---3333A4-2A111112141472--1232O-14212B--231---I--143491-1-------11111--9651--5355333543454559---6--3-18N--PQQFXTNeeUQO21---8C55525B74--------2--1--11-----------------------------2---2-133335665555233344674442333442223--2214-222225676-------3--------------1-1--1-1--111-----------221213----------1------------------113-------6----------------------1----------433-211111111111-111111121111-11111-34344--1-1---------1-1--5---111---377777777777---------11111-54C---1----------1------------11111123222221343------------11111112153311111111111111--------------------3-1--1-----1---------11---3JDA78N7B9-1- -------------1------------------------------------------------------------------------------------------------------------------------------------------------2-----------------------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 237 STR:RPRED 79.0 SQ:SECSTR #######################################################HccccccccccccccHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccTTcHHHHHHHHHTTccccccHHHHHHHHHHHHHHHcTTccTHHHHHTTTTHHHHHHHHHHHTTccTHHHHHHHHTTccHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTcHHcccGGGccHHHHGGGGcccccHHHHH########HHHHHTHHHHHHHHHHHTTTccccccTTTccc DISOP:02AL 1-21| PSIPRED cccHHHHHHccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcccccccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc //