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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ21591.1
DDBJ      :             short chain dehydrogenase
Swiss-Prot:             

Homologs  Archaea  55/68 : Bacteria  878/915 : Eukaryota  192/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:253 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   8->251 2uvdA PDBj 4e-35 36.1 %
:RPS:PDB   1->252 1dohB PDBj 1e-46 22.7 %
:RPS:SCOP  15->252 1pwxA  c.2.1.2 * 4e-51 24.2 %
:HMM:SCOP  6->251 1zemA1 c.2.1.2 * 6e-70 32.7 %
:RPS:PFM   15->179 PF00106 * adh_short 2e-20 31.7 %
:HMM:PFM   12->178 PF00106 * adh_short 1.1e-29 21.0 162/167  
:BLT:SWISS 8->251 FABG_CHLPN 3e-36 34.4 %
:PROS 147->175|PS00061|ADH_SHORT

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21591.1 GT:GENE AAZ21591.1 GT:PRODUCT short chain dehydrogenase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 749914..750675 GB:FROM 749914 GB:TO 750675 GB:DIRECTION + GB:PRODUCT short chain dehydrogenase GB:NOTE unknown specificity GB:PROTEIN_ID AAZ21591.1 GB:DB_XREF GI:71062588 LENGTH 253 SQ:AASEQ MTAIYEDLKNKRVFVTGGGSGIGASIVEHFCEQGSEVYFIDINEKASNKLVLECKNKNFSVPTFIKCDLLNIKDLQNTISKIIDNNGAIDVLVNNAANDERHSIDEVTEEFWNERMNINLRHYFFTVQSVKKAMIANKSGSIINIGSVSWMIGQGGMAAYTAAKSGVVGLTRSFARDLGEFDIRVNSVVPGWVMTERQVEKWLTPESEADMLKKQCLKHKLMPSDIAKTVLFFGSDASSGCTNQDYVVDKGWL GT:EXON 1|1-253:0| BL:SWS:NREP 1 BL:SWS:REP 8->251|FABG_CHLPN|3e-36|34.4|241/248| PROS 147->175|PS00061|ADH_SHORT|PDOC00060| BL:PDB:NREP 1 BL:PDB:REP 8->251|2uvdA|4e-35|36.1|241/246| RP:PDB:NREP 1 RP:PDB:REP 1->252|1dohB|1e-46|22.7|251/271| RP:PFM:NREP 1 RP:PFM:REP 15->179|PF00106|2e-20|31.7|164/169|adh_short| HM:PFM:NREP 1 HM:PFM:REP 12->178|PF00106|1.1e-29|21.0|162/167|adh_short| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 1 RP:SCP:REP 15->252|1pwxA|4e-51|24.2|231/252|c.2.1.2| HM:SCP:REP 6->251|1zemA1|6e-70|32.7|245/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 15255 OP:NHOMOORG 1125 OP:PATTERN 22112268B9B9A995182321218228565822---------21144--622-23112144853-35 DHb3S11466C271g*mKK-Ky33c*KJKKKWw***Zw**6fA*IFE72A71OFL95A11CDV3FFSWUMA11113121288T21533879727331--A8X4FF*EaAL1111111111111138557C844A85EGGHE222ICEDID8777622221623372EGBV6112143323224FB889661H7NFFFFFKGIGIIGJJHNIPPINGIHBHIOLDCA999A8Jg955555435555554CAABDA2D29B26122BE55996797BB866767776734444444454444576677787777633333233395358E5554444547855527866341168222B712332533336554392FbGGQ11111HB*ee569WKSSMIJKJHIKJKKR-FILGDbDQXvY1*ddOdXo*yutoSXGKDKMVOEMPIFI99999999MLKE79C811111111111122332221222122122AIovH7KYSKV*pwoywNPOPLffvsSRSRAQ*V*S*oZ47NMJIAIDETIZIqk7C9586A941111111259KF77P8C412211533224864E44957B97IL332324254335124222222242324779BABDDE6NC46888B8EC9568D89798C1-2335711-111DCEG6H7DFFBDDCDCC-FCEDEACCFEFCEBBDCBCMQNC99C9B79AA9BABBA9A9AAUBA8CBAB31988888888888111778666AA9A4GLKH111627122222462MNPROBM7EBLAQRLOGMScKJIRMKNIM8454454443467G65665AA989BEGDGCC78985652345BB7687--------1-4----2---3-1------2-------34421656763B2 11--WSJ-312-6BEikmcmXjasotoLLCKIJKKKHULPJQQEDEaUYgmx**PYPHJMGKDAJ4755B44DC9342148CDEJF2B-JlNkKWGEBEBB8FOKF-HHF*RcQRRE9586DM8UO5O8f*R-LMV8379MAFRE4DA88L65L9NISarubDlaHPQEUYGTUO37A3f2118MJUX*eiIDCNDCDD ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 253 STR:RPRED 100.0 SQ:SECSTR ccGGGGccTTcEEEETTTTcHHHHHHHHHHHHTTcEEEEEEcccHHHHHHHHHHHHHTTccEEEEEccTTcHHHHHHHHHHHHHHHccccEEEEcccccccccGGGccHHHHHHHHHHHTHHHHHHHHHHHHHccTTcEEEEEEccGGGTcccccccHHHHHHHHHHHHHHHHHHHHHGGGTcEEEEEEEcccccTTcTTccHHHHHHHHHHHccTTcccccHHHHHHHHHHHHcGGGTTccccEEEEccccc DISOP:02AL 1-4| PSIPRED cccccccccccEEEEEccccHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHccccEEEEEEEccccHHHHHHHHHHHHHHHccccEEEEccccccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccEEEHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHcccHHHHHHHHHcccccccccHHHHHHHHHHHccHHHcccccEEEEEccccc //