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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ21629.1
DDBJ      :             sodium:solute transporter family
Swiss-Prot:             

Homologs  Archaea  4/68 : Bacteria  32/915 : Eukaryota  57/199 : Viruses  0/175   --->[See Alignment]
:482 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   60->209 3dh4A PDBj 4e-04 31.7 %
:RPS:PFM   40->222 PF00474 * SSF 2e-05 25.6 %
:HMM:PFM   40->423 PF00474 * SSF 1.3e-28 23.4 381/406  
:BLT:SWISS 25->235 PUTP_HAEIN 6e-12 28.8 %
:PROS 156->181|PS00456|NA_SOLUT_SYMP_1
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21629.1 GT:GENE AAZ21629.1 GT:PRODUCT sodium:solute transporter family GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 786575..788023 GB:FROM 786575 GB:TO 788023 GB:DIRECTION + GB:PRODUCT sodium:solute transporter family GB:NOTE possible urea transporter (Pfam) GB:PROTEIN_ID AAZ21629.1 GB:DB_XREF GI:71062626 LENGTH 482 SQ:AASEQ MDKTYFISQSTSLTLVITISLIFTIVGLIYSKKYQGINNYLTANRNIGFFSLTTSLIASALGAWILFGPASAATWGGIGAVIGYALGTAFPMIFLISLGKKIRTDFPKGSTLIEFLRKRFGKSLFKLILLMTVFYMFVFLCAEITAVAILINYISGTELWVTSLIILIATLAYTLYGGLRASIFTDNIQMIVIVALLLISVFYLTSFTGDQFSFSFIKEKSPHLLSASYIPNYTAGLTFFIAVAATNLFHQGNWQRVYAAKNNEVLKKSLIVAFIVIIPIVFFMGFSGLVAVSANPKVIPDLGFFSLLLSEQTEFLSLIIVILGLSLTISTVDTLVNAISSLIVVDGKATLNLNKKTNYLTLSKYFIVVLSIIAFVIASKGFSVLYLFLLADLFCCAFVLTVFYSFYNKKLNEKTAYISIIIGLIGGFLLFPAPDFSKSLLVGIILPADTFPAFVSQSLLFLSFIIATFLPVIFWKIKGSKK GT:EXON 1|1-482:0| BL:SWS:NREP 1 BL:SWS:REP 25->235|PUTP_HAEIN|6e-12|28.8|208/504| PROS 156->181|PS00456|NA_SOLUT_SYMP_1|PDOC00429| TM:NTM 13 TM:REGION 9->31| TM:REGION 46->68| TM:REGION 78->99| TM:REGION 128->150| TM:REGION 157->179| TM:REGION 187->209| TM:REGION 231->253| TM:REGION 269->291| TM:REGION 322->344| TM:REGION 360->382| TM:REGION 386->408| TM:REGION 420->442| TM:REGION 455->476| SEG 164->176|liiliatlaytly| SEG 271->283|ivafiviipivff| SEG 316->330|lsliivilglsltis| SEG 348->362|katlnlnkktnyltl| SEG 382->400|fsvlylflladlfccafvl| SEG 420->431|iiigliggfllf| BL:PDB:NREP 1 BL:PDB:REP 60->209|3dh4A|4e-04|31.7|142/512| RP:PFM:NREP 1 RP:PFM:REP 40->222|PF00474|2e-05|25.6|180/401|SSF| HM:PFM:NREP 1 HM:PFM:REP 40->423|PF00474|1.3e-28|23.4|381/406|SSF| GO:PFM:NREP 4 GO:PFM GO:0005215|"GO:transporter activity"|PF00474|IPR001734| GO:PFM GO:0006810|"GO:transport"|PF00474|IPR001734| GO:PFM GO:0016020|"GO:membrane"|PF00474|IPR001734| GO:PFM GO:0055085|"GO:transmembrane transport"|PF00474|IPR001734| OP:NHOMO 104 OP:NHOMOORG 93 OP:PATTERN ------------------------1---11---------------1---------------------- -------------------------------------1--------1--------------------1-----------------------------------1---------------------------1-------------------------111--1------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------------------------------------------------------------1-----------------------------------------------1------111---------------------------------------1---1-----1------------------------------------------------------------1----------------------1-1---------------1---1---1--1--------------------------------------------------------------------------------------------1---------------------1111---1--------1--------------------------------------------------------------------------------------------------------------------- ------------11111-----------11---1-1-------1----11111111111111211111-11--11------11111------1---------1-----3------------------------------------------------------32-----------1---111-1---1---1131132 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 142 STR:RPRED 29.5 SQ:SECSTR ###########################################################HHHHHHHHHHccHHHHTHHHHH#HHHTcGGGHHHHHHHHHHHTHHHHHTTccHHHHHHHHTcH###HHHHHHHHHHHHHHHHTHHHHHH####HHHHHHHHHHTTccHHHHHHHHHHHHHHTTccHHHHHHHHHHHHHHHHHHHHHHHHH################################################################################################################################################################################################################################################################################# DISOP:02AL 1-2, 481-482| PSIPRED cccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHEEcccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccHHcEEEccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc //