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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ21666.1
DDBJ      :             probable ATP-binding component of ABC transporter
Swiss-Prot:             

Homologs  Archaea  68/68 : Bacteria  908/915 : Eukaryota  186/199 : Viruses  0/175   --->[See Alignment]
c.37.1
:221 amino acids
:PSIPRED
:BLT:PDB   4->202 1l2tB PDBj 7e-40 42.7 %
:RPS:PDB   4->202 3b5jA PDBj 5e-32 21.0 %
:RPS:SCOP  3->202 1sgwA  c.37.1.12 * 4e-32 15.7 %
:HMM:SCOP  7->221 1ii8.1 c.37.1.12 * 1.7e-59 40.7 %
:RPS:PFM   48->170 PF00005 * ABC_tran 8e-18 45.7 %
:HMM:PFM   48->170 PF00005 * ABC_tran 4.3e-26 38.8 116/118  
:HMM:PFM   20->55 PF03193 * DUF258 0.00016 34.3 35/161  
:HMM:PFM   163->209 PF11640 * TAN 0.00016 22.7 44/154  
:BLT:SWISS 2->202 LOLD_IDILO 9e-43 42.0 %
:PROS 143->157|PS00211|ABC_TRANSPORTER_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21666.1 GT:GENE AAZ21666.1 GT:PRODUCT probable ATP-binding component of ABC transporter GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(820208..820873) GB:FROM 820208 GB:TO 820873 GB:DIRECTION - GB:PRODUCT probable ATP-binding component of ABC transporter GB:PROTEIN_ID AAZ21666.1 GB:DB_XREF GI:71062663 LENGTH 221 SQ:AASEQ MDSLLKLKNVNLKYQTGNDTIKVLKNINLETKKNESISIVGESGSGKTSLIMLAGGLEKATSGKIFFEDQEISKMSEDEVSKIRRKNIGIVFQSFYLIPNYTAVENVALTLELNNLKNPTERAKELLDRFGLKNRFNNLPSQLSGGEQQRVAIARAIAMKPKLILADEPTGNLDSENSQMIADILFKYIKEEKSSLIMVTHDPKLANKAKRKIKIKDGKIV GT:EXON 1|1-221:0| BL:SWS:NREP 1 BL:SWS:REP 2->202|LOLD_IDILO|9e-43|42.0|200/228| PROS 143->157|PS00211|ABC_TRANSPORTER_1|PDOC00185| SEG 35->46|esisivgesgsg| SEG 204->220|klankakrkikikdgki| BL:PDB:NREP 1 BL:PDB:REP 4->202|1l2tB|7e-40|42.7|199/232| RP:PDB:NREP 1 RP:PDB:REP 4->202|3b5jA|5e-32|21.0|195/243| RP:PFM:NREP 1 RP:PFM:REP 48->170|PF00005|8e-18|45.7|116/123|ABC_tran| HM:PFM:NREP 3 HM:PFM:REP 48->170|PF00005|4.3e-26|38.8|116/118|ABC_tran| HM:PFM:REP 20->55|PF03193|0.00016|34.3|35/161|DUF258| HM:PFM:REP 163->209|PF11640|0.00016|22.7|44/154|TAN| GO:PFM:NREP 2 GO:PFM GO:0005524|"GO:ATP binding"|PF00005|IPR003439| GO:PFM GO:0016887|"GO:ATPase activity"|PF00005|IPR003439| RP:SCP:NREP 1 RP:SCP:REP 3->202|1sgwA|4e-32|15.7|185/200|c.37.1.12| HM:SCP:REP 7->221|1ii8.1|1.7e-59|40.7|209/370|c.37.1.12|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 33849 OP:NHOMOORG 1162 OP:PATTERN NNE9JGCBQPPNPNSEYIHJEDAQTEGQU9LEIDBDCBFEFEANSOMdHN*wg7JQKLHGJED4Q16A MOLB*PHRVVZFMCQECDD-DN66I*DDDDDDaUVUNmuvFYLcZbYOYSNFhicCHS77QSTThRY*nyLRNNNoQPPIXOUBBDBCLKNH5HABB--BAOGDEPEPBJ7777777AB9AAAABNLHOQIFLQPMTWXhjEEEbLXUWURQUMSIJDBBAGAOPLRjjlQCHCGDEDIAGAELLKIIsj9IRh********s*******ummnk***YYi*wVVfefccf**QabbbbXWYYaaaYXTWUTRkYSSjkQHSRXbZLMggPPMTcbaabhhkfdafbbbfgeeaafibfcURSSSUUVUVUTShcaUTUbacbh*s*********a*ed*ttYcbY*maillVZJG**dfPVchPQbUhZEZYJNPNKKECDEDEVO***MIZ*pn*bw*vyzt*rvw*-XZ*XUySn**J9*************xCCEnw*tmuz*v*HGHHHHHHXJKCHNJl44445444454466BB4674486686565HABAB9r**n*x*****ihgid****okmmUm***mpylAKhgbdTcWbsn****MbWGLEHaKFFEEFCELJGLTWWm*HXPgbNTnVUgFVTSNOScMOIKILZdTpLJHNFMMLMIHCDDDDDDDDEQFFGDEjehKkMUGLFsJOOPOCOVLLLMKNQPNRR5-8EIFI231222xn**Q*gorrrpsqsln-qonnppronnrrmmnnmmi*****YWbafacbccdccbbcbcc*gdcgggkL2pxywzzywyzzz33DEBDABCIHLJEDub*STRSSVHMPJLQLOWLMPMMCPDKObWihgjl***guxpmX***EFFCEGFEFGYigoghhhhovoqpHGECDDCBCB778735ATLLGGFG88776789*6OBAB97-6ADADEBNMKACIBDB556SeoRUe*dhcBMH 1---F92-7411259815228858174555645485355445633354544464457656642333332122255231233223332--22115-132314-1B86-31O96A6I8I6521386SM3J2d*E-B9F8471F26ED38556G33*7F77J9Kl1Q871N4BlEJE7411--22135M68a2JC42MDFA- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PSIPRED cccEEEEEEEEEEEccccEEEEEEcccEEEEccccEEEEEccccccHHHHHHHHHccccccccEEEEccEEHHcccHHHHHHHHHHHccEEEEEccccccccHHHHHHHHHHHccccHHHHHHHHHHHHccHHHHHHccHHHccccHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHHHHHHccEEEEEcccHHHHHHccEEEEEEccEEc //