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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ21677.1
DDBJ      :             short chain dehydrogenase
Swiss-Prot:             

Homologs  Archaea  56/68 : Bacteria  880/915 : Eukaryota  195/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:258 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->245 2uvdA PDBj 2e-43 36.7 %
:RPS:PDB   1->249 2ae1A PDBj 2e-52 24.1 %
:RPS:SCOP  8->246 1pwxA  c.2.1.2 * 3e-56 21.5 %
:HMM:SCOP  1->245 1zemA1 c.2.1.2 * 5e-85 35.9 %
:RPS:PFM   6->171 PF00106 * adh_short 2e-33 38.6 %
:HMM:PFM   7->171 PF00106 * adh_short 1.9e-33 23.6 161/167  
:BLT:SWISS 3->245 FABG_BACSU 3e-47 40.2 %
:PROS 141->169|PS00061|ADH_SHORT
:PROS 236->249|PS00213|LIPOCALIN

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21677.1 GT:GENE AAZ21677.1 GT:PRODUCT short chain dehydrogenase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 829950..830726 GB:FROM 829950 GB:TO 830726 GB:DIRECTION + GB:PRODUCT short chain dehydrogenase GB:NOTE unknown specificity GB:PROTEIN_ID AAZ21677.1 GB:DB_XREF GI:71062674 LENGTH 258 SQ:AASEQ MKLKDRIAIVTGGGKGIGAEICVRLASEGAKIVIAEMDIENGEKISKKIQGNNGEAIVVETNVAEEDSANNMADVAIKKFGKIDILVNNAGIRHINNILDHTKQQWDDMISVNLTGPYLCCKSVIPHMIKNGKGKIINFGSIASFMGRPDRVAYVAAKSGILGLTRALAVDLTGKNINVNTICPGLISTPFNQKFAEDPTHGKAWGKETIVGRWGLPSDISGAAVFLSSDDADFINGSEIKIDGGWLAAKTRKGEISN GT:EXON 1|1-258:0| BL:SWS:NREP 1 BL:SWS:REP 3->245|FABG_BACSU|3e-47|40.2|241/246| PROS 141->169|PS00061|ADH_SHORT|PDOC00060| PROS 236->249|PS00213|LIPOCALIN|PDOC00187| BL:PDB:NREP 1 BL:PDB:REP 3->245|2uvdA|2e-43|36.7|240/246| RP:PDB:NREP 1 RP:PDB:REP 1->249|2ae1A|2e-52|24.1|245/252| RP:PFM:NREP 1 RP:PFM:REP 6->171|PF00106|2e-33|38.6|166/169|adh_short| HM:PFM:NREP 1 HM:PFM:REP 7->171|PF00106|1.9e-33|23.6|161/167|adh_short| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 1 RP:SCP:REP 8->246|1pwxA|3e-56|21.5|233/252|c.2.1.2| HM:SCP:REP 1->245|1zemA1|5e-85|35.9|245/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 21828 OP:NHOMOORG 1131 OP:PATTERN 2221246BCACABAA829242111F66B9A7E22---------21154--722-44223253854146 NMl5*41966F796***XX-X*55**XWXXXp****w***7*F*bNIC5HD3YMRC5G11ROg6XOpmraG222231222A9a1143377A828331--B6c6JG*FiCQ111111111111115987CEA66CAALLLPP222LDMFMJ9887733433855384IOJkA434355444436LGBBC771JAQIIJIJLILHJLJKLKRIRRISIKJBHIQPMFA999A8Nn888888768888887CBBECA3D3CE36232DH55AA99A8BD87677878784444444455555557667778777774664426669535AE6665555647868838A78431199322C8123325333356564F2MzOOf22222VH*wz89FlbffYNOPOMNPNPPa-OQaOMxOdj*n2*wwVyr******ekOXHUVbUNSXPLSDDDDDDDDXWVHBCIE22242223221222332231222121111CN**PBMsgVp******ZZZaVuu**feeeDa*h*h**t4AaaTNFOMLePkU*tBLE5C8EF8233222247DQL9AVAH522211433427B95G6495CEEDXg35333424422533532233225233488DDADGIGCPHAADCBFAFGECCADAGBB9G1-34779111111FIJN8OAFIIFFEEEGG-IGFHHDEGGGIEHGGFHGGUaTLDCDCC9ACCCCCCCCABACDYFFBFEDE61ACCCCCCCCCCB111A78667HHGH4LQQL111839122222463UVUZWEPAECQBdeZaRWenSTUaXOXSTA665576564667I87887DDA9CPQQPQONDEF96663346HH98AA--------1-4----2-1-3-1------3-------45441666764E3 2211laN-74419FJ***w*u*o****WWKOOQTURRbTWQWXOLMrku*****hpkURUQSGDS99A5E55NEN45465BHHHIH5D-Y*S*NqNIIIILGNTKK-PZK*p*fjiTD9IDKWGjgCfE**f-kamGBFBdHNfL7MEHAWC9fMUQbr**jN*kachUm*Tfjg9KG7*656EcVmn*u*cOKjQSUH ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 258 STR:RPRED 100.0 SQ:SECSTR TccTTcEEEEETcccHHHHHHHHHHHTTTcEEEEEEccHHHHHHHHHHHHHTTccEEEEEccTTcHHHHHHHHHHHHHHTTTcccEEEcccccccccGGGccHHHHHHHHHHHTHHHHHHHHHHHHHHHTTccEEEEEEccGGGTcccTTcHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEcccccHHHHccHHHHHHHHHHHHTccccccccHHHHHHHHHHHHcGGGTTccccEEEEcTTGGGcHTTcTccEE DISOP:02AL 255-258| PSIPRED ccccccEEEEEccccHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHHHHccccEEEEcccccccccHHcccHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccEEEccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccccHHHHHHcccHHHHHHHHHcccccccccHHHHHHHHHHHccHHHcccccEEEEEcccEEccccccccccc //