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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ21723.1
DDBJ      :             Putative undecaprenyl diphosphate synthase
Swiss-Prot:             

Homologs  Archaea  64/68 : Bacteria  871/915 : Eukaryota  139/199 : Viruses  0/175   --->[See Alignment]
c.101.1
:225 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   5->220 1uehB PDBj 4e-38 38.0 %
:RPS:PDB   5->217 2e98A PDBj 1e-58 37.6 %
:RPS:SCOP  5->217 1jp3A  c.101.1.1 * 7e-49 36.9 %
:HMM:SCOP  5->219 1jp3A_ c.101.1.1 * 1.8e-67 43.7 %
:RPS:PFM   10->223 PF01255 * Prenyltransf 3e-40 39.3 %
:HMM:PFM   10->223 PF01255 * Prenyltransf 1e-74 40.8 213/223  
:BLT:SWISS 6->225 UPPS_OCEIH 2e-47 42.3 %
:PROS 169->186|PS01066|UPP_SYNTHETASE
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21723.1 GT:GENE AAZ21723.1 GT:PRODUCT Putative undecaprenyl diphosphate synthase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 875507..876184 GB:FROM 875507 GB:TO 876184 GB:DIRECTION + GB:PRODUCT Putative undecaprenyl diphosphate synthase GB:PROTEIN_ID AAZ21723.1 GB:DB_XREF GI:71062720 LENGTH 225 SQ:AASEQ MNPIKHVAIIMDGNGRWGVKHKQSRNAGHRAGLNTVDLIINHCINHKIKFLTLYTFSSENWKRPKNEIVFLFKLLENFLQKKISKIIEKDIKLKFIGELNKLPTKLQKLIKLSEKKTFNKKTLQVNIALNYGSKIELINTVKKIKRKKITINEKNIDNNLYTKHLPNPDILIRTGNTNRLSNFLLWQLSYTEIFFEKKLWPDFKGKDFDKIMNKFKNIKRNFGSI GT:EXON 1|1-225:0| BL:SWS:NREP 1 BL:SWS:REP 6->225|UPPS_OCEIH|2e-47|42.3|220/252| PROS 169->186|PS01066|UPP_SYNTHETASE|PDOC00817| SEG 81->94|kkiskiiekdiklk| SEG 138->156|intvkkikrkkitinekni| BL:PDB:NREP 1 BL:PDB:REP 5->220|1uehB|4e-38|38.0|216/225| RP:PDB:NREP 1 RP:PDB:REP 5->217|2e98A|1e-58|37.6|213/226| RP:PFM:NREP 1 RP:PFM:REP 10->223|PF01255|3e-40|39.3|214/222|Prenyltransf| HM:PFM:NREP 1 HM:PFM:REP 10->223|PF01255|1e-74|40.8|213/223|Prenyltransf| GO:PFM:NREP 1 GO:PFM GO:0016765|"GO:transferase activity, transferring alkyl or aryl (other than methyl) groups"|PF01255|IPR001441| RP:SCP:NREP 1 RP:SCP:REP 5->217|1jp3A|7e-49|36.9|198/214|c.101.1.1| HM:SCP:REP 5->219|1jp3A_|1.8e-67|43.7|215/228|c.101.1.1|1/1|Undecaprenyl diphosphate synthase| OP:NHOMO 1278 OP:NHOMOORG 1074 OP:PATTERN --1111111111111111111111111111111111111111111-1111211111111111111-11 1221222222222222222-22223222222322222222222222222222222222222222222233211111111111111111111111111--11111111111111111111111111111111111111111111111221111111111111111111222111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112112222232222111112221211111111112211111111111112111111-----112221111122111111111111-222222211111111111111111111111111111111111111111111111111------111111111111111111111111111111111112111111111111111111111111111111111112111111111111111111111111111111111111111111111111111111121111-1111111111111111111111111111111111111111111111111111111-1111111-11111111111111111111-111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111------------------1------1111111111111 ---1111----1-111--1------1-------1-1-----------1---------11111212222-1212121222211221111-11--211--1-11-111112-2111111111-111541318D2-211-11-2-121111111111111122111111-111-1111211281121133251762232222 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 224 STR:RPRED 99.6 SQ:SECSTR TccTcEEEEEEccHHHHHHHHTccHHHHHHHHHHHHHHHHHHHHHTTccEEEEEEccccGGGccHHHHHHHHHHHHHHTTTHHHHHHHTTcEEEEEcccTTccHHHHHHHHHHHHHHTTccccEEEEEccccHHHHHHHHHHHTcccGGGccHHHHHTTcTTTTcccccEEEEcccccccTTcccGGGTTcEEEEccccGGGccHHHHHHHHHHHHHHHHHcTc# PSIPRED cccccEEEEEEccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccHHccHHHHHHHHHHHHHHcccccEEEEEEEccccHHHHHHHHHHHHHHHccccHHHHHHHHcccccccccEEEEccccccccccHHHHHcccEEEEcccccccccHHHHHHHHHHHHHHHcccccc //