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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ21742.1
DDBJ      :             hypothetical outer membrane protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  26/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
b.1.6f.5.1
:632 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   59->200 1wp1A PDBj 9e-05 25.2 %
:RPS:PDB   59->473 3d5kA PDBj 3e-25 13.8 %
:RPS:SCOP  59->473 1wp1A  f.5.1.1 * 5e-27 13.8 %
:HMM:SCOP  1->473 1wp1A_ f.5.1.1 * 2e-44 21.1 %
:HMM:SCOP  507->603 1u2cA1 b.1.6.2 * 5.5e-05 22.6 %
:RPS:PFM   65->266 PF02321 * OEP 2e-09 25.7 %
:RPS:PFM   296->443 PF02321 * OEP 9e-05 22.6 %
:HMM:PFM   64->266 PF02321 * OEP 2.1e-19 24.7 186/188  
:HMM:PFM   290->464 PF02321 * OEP 2.3e-10 15.4 175/188  
:BLT:SWISS 59->200 OPRM_PSEAE 3e-04 25.2 %
:BLT:SWISS 173->455 CUX1_HUMAN 2e-04 22.1 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21742.1 GT:GENE AAZ21742.1 GT:PRODUCT hypothetical outer membrane protein GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 893557..895455 GB:FROM 893557 GB:TO 895455 GB:DIRECTION + GB:PRODUCT hypothetical outer membrane protein GB:NOTE similar to COG1538: Outer membrane protein. Similar to TolC by Fugue analysis. GB:PROTEIN_ID AAZ21742.1 GB:DB_XREF GI:71062739 LENGTH 632 SQ:AASEQ MYQKIIKIVLILSLSLLASCANRGPLPFSFDFLKKSADEDIEKISKIRKQNEILQKNLDIDLYTAIALAIENNKDLKVKLFETALADRQLKDVKFDMLPTMSANAGYSGSDNYQSSTSATVGNNDIAASKGSTYSTSRNRDVVDQDIGFAWNALDFGLSYIRAGQTSDRFLIAKEIEKKSANNIAKEVIRSYWNALSADKLIQKYDPLIKKVKIALSDSQKIEEMLLQKPMDALLYQKELLDIKRALITQRQTLINSKIELGTLMGLLPNQSYKLVATNQPINILDMDLKNMEKHALVSRAELLENRYQERISVAETKVGLRSLLPNFNINAAFTSSSNDYLQNKSNFEFGSSVGANLLNVFRAPSIKKMNEANTEIIKEQRLALSMAILSQVHLANIDFQMSMEEYDTAERYLKVSTKIADQVRNAQKIARFGELELIREEAGTLVAELRRDISFSKMQHSIAQVYTSVGIDITTRDTIVGGTELFAYEIKNKFSGLGKKYIAKVTEPIQKQNPVAKQFDENYKKFEFSDKTFKLEGQGSVQYSARLANDQPLPSWIDFLPTQRAFLIDSVLKGDIHEIELIVNAKNINSTVDDQFTLIVDPILKSQKDLAKIIGTTLKEKAEIVKASKIQ GT:EXON 1|1-632:0| BL:SWS:NREP 2 BL:SWS:REP 59->200|OPRM_PSEAE|3e-04|25.2|127/485| BL:SWS:REP 173->455|CUX1_HUMAN|2e-04|22.1|271/1505| TM:NTM 1 TM:REGION 1->23| SEG 4->17|kiikivlilslsll| BL:PDB:NREP 1 BL:PDB:REP 59->200|1wp1A|9e-05|25.2|127/456| RP:PDB:NREP 1 RP:PDB:REP 59->473|3d5kA|3e-25|13.8|400/454| RP:PFM:NREP 2 RP:PFM:REP 65->266|PF02321|2e-09|25.7|187/189|OEP| RP:PFM:REP 296->443|PF02321|9e-05|22.6|148/189|OEP| HM:PFM:NREP 2 HM:PFM:REP 64->266|PF02321|2.1e-19|24.7|186/188|OEP| HM:PFM:REP 290->464|PF02321|2.3e-10|15.4|175/188|OEP| GO:PFM:NREP 4 GO:PFM GO:0005215|"GO:transporter activity"|PF02321|IPR003423| GO:PFM GO:0006810|"GO:transport"|PF02321|IPR003423| GO:PFM GO:0005215|"GO:transporter activity"|PF02321|IPR003423| GO:PFM GO:0006810|"GO:transport"|PF02321|IPR003423| RP:SCP:NREP 1 RP:SCP:REP 59->473|1wp1A|5e-27|13.8|400/456|f.5.1.1| HM:SCP:REP 1->473|1wp1A_|2e-44|21.1|435/0|f.5.1.1|1/1|Outer membrane efflux proteins (OEP)| HM:SCP:REP 507->603|1u2cA1|5.5e-05|22.6|93/0|b.1.6.2|1/1|Cadherin-like| OP:NHOMO 33 OP:NHOMOORG 27 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------1----------------1---------------------------11-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------31------------------------------1----------------1--------------------1-----1-----------------1------------1-----------1---------------------1------------------------------------1----------------------------------12------------------------------------12----------------------------------------------------------2-------------------------------1-1---1-1--1-----------------------------------------2-------------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 414 STR:RPRED 65.5 SQ:SECSTR ##########################################################cHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHTTccccEEEEEEEEEEEcTTTcccccccccccccEEEEcccEEEEEEEEEEEEEEEEEcTTcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTccccTTccccccTTc#ccccccccccGGGHHHHcHHHHHHHHHHHHHHHHHHHHHTTcccEEEEEEEEEEEEccccccTTcEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTcc############################################################################################################################################################### DISOP:02AL 1-2, 111-131| PSIPRED cHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHcHHHHHHHccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEcccccccccccccccccccccccccccccccccEEEEEEcEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEEcccccccccccccEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHccccccHHHcccccHHHHccccEEEccccccEEHHcccccccccHHHHHcccHHHHHHHHHHHccHHHEEEEEEcccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccc //