[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ21780.1
DDBJ      :             glycosyl hydrolase
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  511/915 : Eukaryota  45/199 : Viruses  0/175   --->[See Alignment]
c.1.8
:316 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   32->284 1y65A PDBj 1e-19 31.4 %
:RPS:PDB   27->290 3bmxA PDBj 4e-33 27.0 %
:RPS:SCOP  27->294 1tr9A  c.1.8.7 * 4e-37 29.2 %
:HMM:SCOP  4->310 1tr9A_ c.1.8.7 * 1.7e-47 29.7 %
:RPS:PFM   63->281 PF00933 * Glyco_hydro_3 2e-18 29.8 %
:HMM:PFM   116->281 PF00933 * Glyco_hydro_3 1.1e-21 23.6 161/227  
:BLT:SWISS 32->284 NAGZ_PHOLL 2e-30 33.6 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21780.1 GT:GENE AAZ21780.1 GT:PRODUCT glycosyl hydrolase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 954688..955638 GB:FROM 954688 GB:TO 955638 GB:DIRECTION + GB:PRODUCT glycosyl hydrolase GB:NOTE family 3 GB:PROTEIN_ID AAZ21780.1 GB:DB_XREF GI:71062777 LENGTH 316 SQ:AASEQ MMDNRKSFIVGLKSTKLLTSEKKFLIKHKPWGIILFSRNIKNIEQLKKLTGQIRKIFNDKKYPILIDQEGGRVNRLKKFFKADKFTGEFFGNLYLKDKKKFYIEYKKFINKTVLLLKNVGININTLPVLDVRSKGSSAIIGDRAFSDNAKIVSEIGDICIKEFHNNKIATVIKHIPGHGLAKVDSHKKTPTINKELRYLNNHDFLAFKNKNSLFAMTAHLIYKKIDKVNTATHSKKIIKLIRNLIKFRNILMSDDISMKSLKGSIAINTKKSFSAGCDLVLHCNGNLKEMNDVALYSPVISKFIKKKTSQFYKIIS GT:EXON 1|1-316:0| BL:SWS:NREP 1 BL:SWS:REP 32->284|NAGZ_PHOLL|2e-30|33.6|247/340| SEG 12->25|lkstklltsekkfl| SEG 96->111|kdkkkfyieykkfink| SEG 235->246|kkiiklirnlik| BL:PDB:NREP 1 BL:PDB:REP 32->284|1y65A|1e-19|31.4|242/330| RP:PDB:NREP 1 RP:PDB:REP 27->290|3bmxA|4e-33|27.0|256/617| RP:PFM:NREP 1 RP:PFM:REP 63->281|PF00933|2e-18|29.8|208/226|Glyco_hydro_3| HM:PFM:NREP 1 HM:PFM:REP 116->281|PF00933|1.1e-21|23.6|161/227|Glyco_hydro_3| GO:PFM:NREP 2 GO:PFM GO:0004553|"GO:hydrolase activity, hydrolyzing O-glycosyl compounds"|PF00933|IPR001764| GO:PFM GO:0005975|"GO:carbohydrate metabolic process"|PF00933|IPR001764| RP:SCP:NREP 1 RP:SCP:REP 27->294|1tr9A|4e-37|29.2|257/330|c.1.8.7| HM:SCP:REP 4->310|1tr9A_|1.7e-47|29.7|296/0|c.1.8.7|1/1|(Trans)glycosidases| OP:NHOMO 638 OP:NHOMOORG 558 OP:PATTERN ---------------------------1---------------------------------1------ -2--3--1------1------------------111----1--1--------1----1--23-1111121------------2-----22-1-111---1-1-11-21----------------122122221222-11--------1------1-----------11111--11-----11-111----2--1----------------1111----1-21221------111-------------------------------------1-----------------------------------------1----------111----------------11-211--1----11--1-----1-2-1--11-1111-----1122211111111111111-1111-11111111121-111122122211111111111111111--------1---1-11------------1111111111111----111111111111112111111111112222221111111111122111111111111211112111111111111112111111---1-------2---11111111-11111----------------1---1----12-1112111111111111111111111--11111------11111111111111111-1111111111111111111111211111111111111111111111111111-111111111111---1111111111-111-11111111111111111111111111-11111111111111111111122121121111111111111111111111111211-1111----222222221-1--------------------------2111121111-1 ---------------1---11111112--11112212322322----122-------------11----1--1-1-------1111---1-1--1--------111---------------------------------------------------------1----------1----1----1-------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 288 STR:RPRED 91.1 SQ:SECSTR ##########################HHcccEEEccGGGcccHHHHHHHHHHHHHHccccccEEEEccccTTcccccccccccccGcccccHHHHHHHccHHHHHHHHHHHHHHHHHHHTccEEccccccccccTTccccGGGcccccHHHHHHHHHHHHHHHHHTTcEEEEEEETccTTccccTTTccccccccHHHHHHTTHHHHHHTTccEEEEcccccTTTcccEEEccHHHHccccccccccccEEEcccTTcHHHTccHHHHHHHHHHHTcccEEcccccccGGHHcccccGGGGGGcccccccHHHH## DISOP:02AL 1-3| PSIPRED ccccccEEEEEcccccccHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHHHcccccEEEEEccccEEEEcccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccEEEccEEEccccccccccccccccccHHHHHHHHHHHHHHHHHcccEEEEEEEccccccccccccccccccccHHHHHHccHHHHHHHccccEEEEEEEccccccccccccHHHHHHHHHHHHccccEEEEccccHHHHHccHHHHHHHHHHccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc //