[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ21798.1
DDBJ      :             Peptidase family M48
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  377/915 : Eukaryota  133/199 : Viruses  0/175   --->[See Alignment]
c.37.1d.92.1
:258 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   34->239 3c37A PDBj 2e-14 31.3 %
:RPS:PDB   15->244 3c37B PDBj 5e-23 23.7 %
:RPS:SCOP  5->132 1eb6A  d.92.1.12 * 7e-08 16.8 %
:RPS:SCOP  127->225 1bmfD3  c.37.1.11 * 6e-04 30.0 %
:RPS:PFM   97->238 PF01435 * Peptidase_M48 9e-08 31.9 %
:HMM:PFM   18->239 PF01435 * Peptidase_M48 5.2e-37 25.1 203/225  
:BLT:SWISS 69->244 OMA1_YEAST 1e-24 37.0 %
:PROS 120->129|PS00142|ZINC_PROTEASE

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21798.1 GT:GENE AAZ21798.1 GT:PRODUCT Peptidase family M48 GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(971424..972200) GB:FROM 971424 GB:TO 972200 GB:DIRECTION - GB:PRODUCT Peptidase family M48 GB:PROTEIN_ID AAZ21798.1 GB:DB_XREF GI:71062795 LENGTH 258 SQ:AASEQ MLGACSTAPITDRRQLKIIPESKLNAQAAQIFEKVKEKEKMSDDTKTLNEIKDIGKRMEDAISEYFYRAGQNDPTVNFDWEYILIDNKKVKNAWCMPGGKIAVYTGILDVTKNTNGLASVMGHEIAHAVAKHSVERASRSALLQTGTSLIDIFSGGKLGQINQATGMNTVGLLSQIGIMNPFSRTQESEADYLGMIFASLSGFDIRETKKLWERMKAENKGKEPPQFMSTHPSSSKRIKDLSEWENSVILDYSPITIS GT:EXON 1|1-258:0| BL:SWS:NREP 1 BL:SWS:REP 69->244|OMA1_YEAST|1e-24|37.0|165/345| PROS 120->129|PS00142|ZINC_PROTEASE|PDOC00129| BL:PDB:NREP 1 BL:PDB:REP 34->239|3c37A|2e-14|31.3|166/217| RP:PDB:NREP 1 RP:PDB:REP 15->244|3c37B|5e-23|23.7|190/216| RP:PFM:NREP 1 RP:PFM:REP 97->238|PF01435|9e-08|31.9|135/208|Peptidase_M48| HM:PFM:NREP 1 HM:PFM:REP 18->239|PF01435|5.2e-37|25.1|203/225|Peptidase_M48| GO:PFM:NREP 3 GO:PFM GO:0004222|"GO:metalloendopeptidase activity"|PF01435|IPR001915| GO:PFM GO:0006508|"GO:proteolysis"|PF01435|IPR001915| GO:PFM GO:0016020|"GO:membrane"|PF01435|IPR001915| RP:SCP:NREP 2 RP:SCP:REP 5->132|1eb6A|7e-08|16.8|119/177|d.92.1.12| RP:SCP:REP 127->225|1bmfD3|6e-04|30.0|90/276|c.37.1.11| OP:NHOMO 733 OP:NHOMOORG 511 OP:PATTERN --------------------------------1----------------------------------- -32--------------------------------------------------------------------------------1--11-----111---12211211111--------------1-----1---1-----------343122---11------2-2212-1-------------------1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------121-111211111--1----11111-------------1111111-112-11111111111211221-----------------------2-1-----------------------------11111-111112222221222222112222222222222111113322222122123-22421----1-1-22211-11111112121111213111121113212-12-1111----------------1-----22222-221221111112211112122122---3131------1-11-112222222222-2222222222222222221---111112112222222212122112222221-211111111111--12---------22421111111-----111122232222231222221112311111111---------21112111112111133222222222222--1-11------------1--------------------------------------1- ----111-----222-111111111111111-1----------1--1111111111111111111-11111111111-1111111111--11111112221211-1-1--2---1---1---1-11-11331-2111---1--111-1111-111111111-1221--------111--1----11121111115222- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 230 STR:RPRED 89.1 SQ:SECSTR ####ccT###HHHHccccccHHHHHHHHHHHHHHHHTTccccccHHHHHHHHHHHHHHHHTHHHHHHHcHTTccccccccEEEEEcccccccEEEETTTEEEEEHHHHHHcccHHHHHHHHHHHHHHHHTTHHHHHHHHHcHHHHHHHHHccHHHccHHHHHHHHTccHHHHHHHHcTTccccHHHHHHHHHHHHHHHHHTTccTTHHHHHHHHHTc##########TccccccHHHHHHHHHHHHT########### DISOP:02AL 32-40, 215-228, 257-258| PSIPRED ccccccccccccccEEccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEccccccEEEccccEEEEEHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHccccHHHHHHHHHHHHHHHHHHccccccc //