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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : AAZ21809.1
DDBJ      :             TatD related DNase
Swiss-Prot:             

Homologs  Archaea  44/68 : Bacteria  907/915 : Eukaryota  157/199 : Viruses  0/175   --->[See Alignment]
c.1.9
:254 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   1->254 1yixA PDBj 1e-45 35.1 %
:RPS:PDB   2->238 3bq6B PDBj 2e-39 12.2 %
:RPS:SCOP  2->253 1j6oA  c.1.9.12 * 9e-63 31.5 %
:HMM:SCOP  1->254 1yixA1 c.1.9.12 * 5.2e-79 42.2 %
:RPS:PFM   2->252 PF01026 * TatD_DNase 1e-53 42.3 %
:HMM:PFM   2->253 PF01026 * TatD_DNase 1.2e-76 37.2 250/255  
:BLT:SWISS 1->254 Y355_BUCAI 1e-59 46.4 %
:PROS 1->9|PS01137|TATD_1

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21809.1 GT:GENE AAZ21809.1 GT:PRODUCT TatD related DNase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 982348..983112 GB:FROM 982348 GB:TO 983112 GB:DIRECTION + GB:PRODUCT TatD related DNase GB:PROTEIN_ID AAZ21809.1 GB:DB_XREF GI:71062806 LENGTH 254 SQ:AASEQ MIDSHCHLDHEPLLENLNEVIKRSKEAGISKLLTICTTPESFDRIKKIIITDPMIFGTFGIHPHETEKSHLIDKNYITSQVNQNERIIGIGETGLDFFYNHSNKERQIDSFKAHIEASIELNMPIIIHSRNAESETYEILKSYKSEKLKILMHCFTGSLNFANKLIELNAFFSASGIITFKNSLELQKTFKSIPLNKLLVETDSPFLAPIPMRGKKNEPSFIKYTLEKLSILKEKTNQEMSDLTTQNFNKLFNL GT:EXON 1|1-254:0| BL:SWS:NREP 1 BL:SWS:REP 1->254|Y355_BUCAI|1e-59|46.4|252/264| PROS 1->9|PS01137|TATD_1|PDOC00836| BL:PDB:NREP 1 BL:PDB:REP 1->254|1yixA|1e-45|35.1|251/265| RP:PDB:NREP 1 RP:PDB:REP 2->238|3bq6B|2e-39|12.2|229/718| RP:PFM:NREP 1 RP:PFM:REP 2->252|PF01026|1e-53|42.3|248/255|TatD_DNase| HM:PFM:NREP 1 HM:PFM:REP 2->253|PF01026|1.2e-76|37.2|250/255|TatD_DNase| GO:PFM:NREP 1 GO:PFM GO:0016888|"GO:endodeoxyribonuclease activity, producing 5'-phosphomonoesters"|PF01026|IPR001130| RP:SCP:NREP 1 RP:SCP:REP 2->253|1j6oA|9e-63|31.5|251/260|c.1.9.12| HM:SCP:REP 1->254|1yixA1|5.2e-79|42.2|251/0|c.1.9.12|1/1|Metallo-dependent hydrolases| OP:NHOMO 1787 OP:NHOMOORG 1108 OP:PATTERN --1-1-121111111221111-----------22111111111-----1111111111111---11-1 1111111111111111111-111111111111111111111111111111111111111111111111111111111111-1111111111111111--2121111111111111111111111111111111111111111111111111111111111111111111111111111111111121111111122222222122222221111122211111111111112211111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111121111111111111221111111111112111111111111111111111111211111111111111111111111111111-11111111111122211111111111112111111111111111111111111111111111111111111111111111111111111122222222222222222222222222222222422222222222212212232222222222222111223212111211111111222222232211221111111111111111111111111111223323223333333333333333333333331-2111211111133333333333333333-33333333333333333333333322233333333333333333332333311323233333333111311111111112333223232222212222332232222232333333333333333333212132122333333333333332212222222222211311111111111111132111112-11211111111111211111111111111121 11-1441-21111-2-11-2121232211-11111111-1-1111111122222-----1-111--------1--------11-1-11-1211126-11121-12111227254132-211233A23417N4135432-162444342343325122352222831132232452-1-1511--22232142123332- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 254 STR:RPRED 100.0 SQ:SECSTR cTTcccEEEEcccccccccccccHHHHHHHHHHTTTcccEEEHHHHHTcEETTEEcccHHHHHHHHHHHHHHHHHHHHHHHHTTcccEEEEcGGGGccccHcHcHHHHHHHHHHHHTTTTcTccEEEEccccccccHHHHHTccccEEEEEcccccHHHHHHHHHcccTTcEEEEEEEcccccccHHHHHHHHHHTccEEEEcccGGGGGcccccTTcccccTTcGGGcccHHHHHHHHHHHHHTHHHHHHcTc PSIPRED cEEEEEccccHHHHccHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHcccEEEEEEccHHHHccccHHHHHHHHHHHHccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHccccEEEEEEcHHHHHHHHHHHcccccccEEEEcccccHHHHHHHHHcccEEEEccccccccHHHHHHHHHHcccccEEEEcccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcc //